Variant report

Variant	rs55739455
Chromosome Location	chr6:73262464-73262465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73256563..73258779-chr6:73261159..73263806,2	K562	blood:
2	chr6:73239217..73240861-chr6:73262225..73264019,2	K562	blood:
3	chr6:73262215..73264630-chr6:73332275..73334908,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10085254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485210	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10485211	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147536	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147538	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147540	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202117	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1202118	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202120	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202121	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202122	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334345	0.85[EUR][1000 genomes]
rs1590801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882468	0.88[EUR][1000 genomes]
rs16882473	0.92[EUR][1000 genomes]
rs16882476	0.90[EUR][1000 genomes]
rs16882506	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16882539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307137	0.92[EUR][1000 genomes]
rs59106883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59352656	0.92[EUR][1000 genomes]
rs61032405	0.92[EUR][1000 genomes]
rs66805874	0.83[EUR][1000 genomes]
rs68186765	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6909267	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939319	0.88[EUR][1000 genomes]
rs72941783	0.85[EUR][1000 genomes]
rs72941788	0.85[EUR][1000 genomes]
rs72943183	0.92[EUR][1000 genomes]
rs72946182	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72946193	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72948113	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9442816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446697	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9446701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446705	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73257000-73264800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:73259000-73263400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:73260000-73262800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:73261000-73265200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:73261000-73266000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:73261200-73262600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:73261200-73265800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:73261400-73262600	Enhancers	K562	blood
9	chr6:73261600-73262600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:73262000-73263400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:73262200-73262800	Enhancers	HMEC	breast
12	chr6:73262200-73262800	Enhancers	Osteobl	bone
13	chr6:73262200-73263400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:73262200-73266000	Enhancers	HSMM	muscle
15	chr6:73262200-73266200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:73262400-73262600	Enhancers	A549	lung
17	chr6:73262400-73263000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:73262400-73263000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:73262400-73263000	Enhancers	NH-A	brain
20	chr6:73262400-73263200	Flanking Active TSS	NHEK	skin
21	chr6:73262400-73264600	Weak transcription	Pancreas	Pancrea
22	chr6:73262400-73265800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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