Variant report

Variant	rs12029835
Chromosome Location	chr1:56119504-56119505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56119054..56121303-chr1:56122275..56124913,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11206646	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs12035892	0.92[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs12046600	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs12047589	0.92[CHB][hapmap];0.81[AMR][1000 genomes]
rs12403776	1.00[CHB][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes]
rs1392138	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs1392139	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs1499674	0.86[ASN][1000 genomes]
rs1499675	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs17112559	1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17112560	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17112610	0.92[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17112615	1.00[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17112658	0.92[CHB][hapmap];0.90[AMR][1000 genomes]
rs1828802	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1976362	0.86[ASN][1000 genomes]
rs3862236	0.89[ASW][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs3889741	0.92[CHB][hapmap];0.90[AMR][1000 genomes]
rs3914412	0.92[CHB][hapmap];0.90[AMR][1000 genomes]
rs4317850	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs55888217	1.00[AMR][1000 genomes]
rs58586799	0.90[AMR][1000 genomes]
rs59832333	0.90[AMR][1000 genomes]
rs6672047	0.88[ASW][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs6689891	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs6693323	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs74072496	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74075506	0.90[AMR][1000 genomes]
rs7513796	0.92[CHB][hapmap];0.81[CHD][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes]
rs7551229	0.92[CHB][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes]
rs769973	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9436516	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56116400-56120400	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:56116600-56119600	Weak transcription	Psoas Muscle	Psoas
3	chr1:56117800-56122800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:56118600-56123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:56118800-56123800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:56119200-56123600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:56119400-56120000	Enhancers	Ovary	ovary

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