Variant report

Variant	rs1828802
Chromosome Location	chr1:56115427-56115428
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11206646	0.81[CHB][hapmap];0.92[ASN][1000 genomes]
rs12029835	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12035892	0.84[CHB][hapmap];0.83[AMR][1000 genomes]
rs12046600	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[MKK][hapmap];0.92[ASN][1000 genomes]
rs12047589	0.84[CHB][hapmap]
rs12403776	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs1392138	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.92[MKK][hapmap];0.92[ASN][1000 genomes]
rs1392139	0.82[CHB][hapmap];0.92[ASN][1000 genomes]
rs1499674	0.92[ASN][1000 genomes]
rs1499675	0.81[CHB][hapmap];0.92[ASN][1000 genomes]
rs17112559	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112560	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112610	0.84[CHB][hapmap];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17112615	0.84[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17112658	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs1976362	0.92[ASN][1000 genomes]
rs3862236	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs3889741	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs3914412	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs4317850	0.92[ASN][1000 genomes]
rs55888217	0.95[AMR][1000 genomes]
rs58586799	0.85[AMR][1000 genomes]
rs59832333	0.85[AMR][1000 genomes]
rs6672047	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs6689891	0.82[CHB][hapmap];0.92[ASN][1000 genomes]
rs6693323	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.92[MKK][hapmap];0.92[ASN][1000 genomes]
rs74072496	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74075506	0.85[AMR][1000 genomes]
rs7513796	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs7551229	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs769973	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9436516	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56107200-56115800	Weak transcription	Aorta	Aorta
2	chr1:56115200-56115600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr1:56115400-56116600	Enhancers	Ovary	ovary

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