Variant report

Variant	rs17112658
Chromosome Location	chr1:56170095-56170096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11206646	0.85[CHB][hapmap]
rs12029835	0.92[CHB][hapmap];0.90[AMR][1000 genomes]
rs12035892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12046600	0.84[CHB][hapmap]
rs12047589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12403776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1392138	0.84[CHB][hapmap]
rs1392139	0.86[CHB][hapmap]
rs1499675	0.85[CHB][hapmap]
rs17112559	0.93[CHB][hapmap];0.87[AMR][1000 genomes]
rs17112560	0.92[CHB][hapmap];0.85[AMR][1000 genomes]
rs17112610	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes]
rs17112615	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes]
rs1828802	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs3862236	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3889741	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3914412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4317850	0.83[CHB][hapmap]
rs55888217	0.90[AMR][1000 genomes]
rs58586799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59832333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6672047	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6689891	0.86[CHB][hapmap]
rs6693323	0.84[CHB][hapmap]
rs74072496	0.87[AMR][1000 genomes]
rs74075506	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7513796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7551229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs769973	0.93[CHB][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:56167600-56174000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:56167800-56179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56167800-56181000	Weak transcription	HSMM	muscle
6	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:56169000-56170200	Enhancers	Fetal Lung	lung
8	chr1:56169000-56170400	Enhancers	NHLF	lung
9	chr1:56169200-56170200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:56169200-56170200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56169200-56170200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:56169200-56170400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:56169200-56170800	Enhancers	Fetal Stomach	stomach
14	chr1:56169400-56170200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:56169400-56170200	Enhancers	Fetal Muscle Leg	muscle
16	chr1:56169400-56170200	Enhancers	Ovary	ovary
17	chr1:56169600-56170200	Enhancers	Adipose Nuclei	Adipose
18	chr1:56169800-56173200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:56169800-56177800	Weak transcription	Placenta	Placenta

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