Variant report

Variant	rs17112615
Chromosome Location	chr1:56124164-56124165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56119054..56121303-chr1:56122275..56124913,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11206646	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs12029835	1.00[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12035892	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs12046600	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.80[ASN][1000 genomes]
rs12047589	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12403776	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes]
rs1392138	0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.80[ASN][1000 genomes]
rs1392139	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs1499674	0.80[ASN][1000 genomes]
rs1499675	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs17112559	0.92[CHB][hapmap];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17112560	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17112610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112658	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes]
rs1828802	0.84[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1976362	0.80[ASN][1000 genomes]
rs3862236	0.89[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs3889741	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes]
rs3914412	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes]
rs4317850	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs55888217	0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58586799	0.87[AMR][1000 genomes]
rs59832333	0.87[AMR][1000 genomes]
rs6672047	0.88[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs6689891	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs6693323	0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.80[ASN][1000 genomes]
rs74072496	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs74075506	0.87[AMR][1000 genomes]
rs7513796	1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs7551229	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs769973	0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9436516	0.82[JPT][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56122800-56125600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:56123200-56124200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:56123400-56124400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:56123600-56124400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:56123600-56124600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:56123800-56124200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:56123800-56124200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:56123800-56124200	Enhancers	HMEC	breast
9	chr1:56123800-56124400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:56123800-56124400	Enhancers	Fetal Muscle Leg	muscle
11	chr1:56123800-56125200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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