Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11206646	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs12029835	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12035892	0.93[CHB][hapmap]
rs12046600	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs12047589	0.93[CHB][hapmap]
rs12403776	1.00[CHB][hapmap]
rs1392138	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs1392139	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs1499674	0.92[ASN][1000 genomes]
rs1499675	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs17112559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112610	0.93[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17112615	0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17112658	0.93[CHB][hapmap]
rs1828802	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1976362	0.92[ASN][1000 genomes]
rs3862236	0.92[CHB][hapmap]
rs3889741	0.93[CHB][hapmap]
rs3914412	0.93[CHB][hapmap]
rs4317850	0.91[CHB][hapmap];0.92[ASN][1000 genomes]
rs55888217	0.88[AMR][1000 genomes]
rs6672047	0.92[CHB][hapmap]
rs6689891	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs6693323	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs74072496	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7513796	0.93[CHB][hapmap]
rs7551229	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56107200-56115800	Weak transcription	Aorta	Aorta
2	chr1:56110200-56115200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:56112600-56114400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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