Variant report

Variant	rs12047589
Chromosome Location	chr1:56177304-56177305
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56164134..56166630-chr1:56174499..56177459,2	MCF-7	breast:
2	chr1:56176000..56178931-chr1:56179257..56182053,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11206646	0.85[CHB][hapmap]
rs11485536	1.00[EUR][1000 genomes]
rs12029835	0.92[CHB][hapmap];0.81[AMR][1000 genomes]
rs12035892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12046600	0.84[CHB][hapmap]
rs12097818	1.00[EUR][1000 genomes]
rs12403776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1392138	0.84[CHB][hapmap]
rs1392139	0.86[CHB][hapmap]
rs1499675	0.85[CHB][hapmap]
rs17112382	1.00[EUR][1000 genomes]
rs17112559	0.93[CHB][hapmap]
rs17112560	0.92[CHB][hapmap]
rs17112610	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17112615	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17112658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112722	1.00[EUR][1000 genomes]
rs1828802	0.84[CHB][hapmap]
rs1926906	1.00[EUR][1000 genomes]
rs3862236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3889741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3914412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4317850	0.83[CHB][hapmap]
rs55888217	0.81[AMR][1000 genomes]
rs58586799	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59832333	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6672047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6689891	0.86[CHB][hapmap]
rs6693323	0.84[CHB][hapmap]
rs74075506	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7513796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7551229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs769973	0.93[CHB][hapmap]
rs9988503	1.00[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:56167800-56179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56167800-56181000	Weak transcription	HSMM	muscle
4	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:56169800-56177800	Weak transcription	Placenta	Placenta
6	chr1:56170200-56177800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:56170200-56181000	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:56174000-56186000	Weak transcription	Spleen	Spleen
9	chr1:56174200-56183000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:56174400-56178800	Weak transcription	Psoas Muscle	Psoas
11	chr1:56175200-56177800	Weak transcription	Fetal Lung	lung
12	chr1:56177200-56178800	Enhancers	NHLF	lung

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