Variant report

Variant	rs1204217
Chromosome Location	chr6:13863733-13863734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:
2	chr6:13812222..13814493-chr6:13862660..13864603,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10498684	0.83[ASN][1000 genomes]
rs1078046	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10949002	0.96[ASN][1000 genomes]
rs1107758	0.96[ASN][1000 genomes]
rs1107759	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204184	0.91[ASN][1000 genomes]
rs1204191	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204195	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204197	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204202	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204205	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204207	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1204208	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1204209	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204210	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204214	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1204219	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1204224	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204229	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1204232	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1204234	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1204235	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1204237	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204240	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1204241	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1204246	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1204250	0.84[GIH][hapmap]
rs1204254	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12192978	0.88[ASN][1000 genomes]
rs12205612	0.95[ASN][1000 genomes]
rs12214124	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662217	0.97[ASN][1000 genomes]
rs12662221	0.89[ASN][1000 genomes]
rs12662533	0.96[ASN][1000 genomes]
rs12662534	0.96[ASN][1000 genomes]
rs12662535	0.96[ASN][1000 genomes]
rs1309311	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13216137	0.95[ASN][1000 genomes]
rs13216246	0.96[ASN][1000 genomes]
rs1535811	0.96[ASN][1000 genomes]
rs1535812	0.96[ASN][1000 genomes]
rs1570623	0.90[ASN][1000 genomes]
rs1807919	0.99[ASN][1000 genomes]
rs2014484	0.99[ASN][1000 genomes]
rs28594083	0.96[ASN][1000 genomes]
rs28619173	0.96[ASN][1000 genomes]
rs28716055	0.98[ASN][1000 genomes]
rs2876328	0.96[ASN][1000 genomes]
rs34901968	0.94[ASN][1000 genomes]
rs34957554	0.97[ASN][1000 genomes]
rs35198802	0.94[ASN][1000 genomes]
rs35904457	0.96[ASN][1000 genomes]
rs4715639	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55742155	0.92[ASN][1000 genomes]
rs56759353	0.82[ASN][1000 genomes]
rs6459171	0.84[ASN][1000 genomes]
rs6906019	0.96[ASN][1000 genomes]
rs6919520	0.96[ASN][1000 genomes]
rs6919523	0.96[ASN][1000 genomes]
rs6927092	0.96[ASN][1000 genomes]
rs6938479	0.82[ASN][1000 genomes]
rs72833105	0.96[ASN][1000 genomes]
rs72833108	0.94[ASN][1000 genomes]
rs72833112	0.97[ASN][1000 genomes]
rs72833113	0.97[ASN][1000 genomes]
rs72833115	0.99[ASN][1000 genomes]
rs72833116	0.99[ASN][1000 genomes]
rs72833124	0.89[ASN][1000 genomes]
rs7753981	0.99[ASN][1000 genomes]
rs7755582	0.96[ASN][1000 genomes]
rs7758088	0.99[ASN][1000 genomes]
rs7770830	0.90[ASN][1000 genomes]
rs7771874	0.90[ASN][1000 genomes]
rs7772023	0.90[ASN][1000 genomes]
rs7772769	0.96[ASN][1000 genomes]
rs9357919	0.96[ASN][1000 genomes]
rs9357920	0.96[ASN][1000 genomes]
rs9357925	0.92[ASN][1000 genomes]
rs9357929	0.85[ASN][1000 genomes]
rs9367691	0.93[ASN][1000 genomes]
rs9367692	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9367696	0.90[ASN][1000 genomes]
rs9367697	0.89[ASN][1000 genomes]
rs9370532	0.96[ASN][1000 genomes]
rs9370537	0.99[ASN][1000 genomes]
rs9370546	0.88[ASN][1000 genomes]
rs9382632	0.95[ASN][1000 genomes]
rs9382633	0.96[ASN][1000 genomes]
rs9382634	0.93[ASN][1000 genomes]
rs9382641	0.96[ASN][1000 genomes]
rs9382651	0.92[ASN][1000 genomes]
rs9382660	0.90[ASN][1000 genomes]
rs9382661	0.90[ASN][1000 genomes]
rs9396212	0.96[ASN][1000 genomes]
rs9396227	0.91[ASN][1000 genomes]
rs9396233	0.84[ASN][1000 genomes]
rs9464395	0.92[ASN][1000 genomes]
rs9464398	0.87[ASN][1000 genomes]
rs9475703	0.93[ASN][1000 genomes]
rs9475705	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3475107	chr6:13834840-13863839	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3475109	chr6:13835023-13863759	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13847800-13864000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:13860800-13864000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:13862400-13865200	Enhancers	Fetal Intestine Large	intestine
4	chr6:13862600-13865600	Enhancers	Fetal Intestine Small	intestine
5	chr6:13863400-13863800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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