Variant report

Variant	rs55742155
Chromosome Location	chr6:13865633-13865634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13852220..13855025-chr6:13864513..13866779,2	MCF-7	breast:
2	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10498684	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1078046	0.89[ASN][1000 genomes]
rs10949002	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1107758	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1107759	0.89[ASN][1000 genomes]
rs1204184	0.85[ASN][1000 genomes]
rs1204191	0.89[ASN][1000 genomes]
rs1204195	0.89[ASN][1000 genomes]
rs1204197	0.89[ASN][1000 genomes]
rs1204202	0.89[ASN][1000 genomes]
rs1204205	0.89[ASN][1000 genomes]
rs1204207	0.87[ASN][1000 genomes]
rs1204208	0.87[ASN][1000 genomes]
rs1204209	0.90[ASN][1000 genomes]
rs1204210	0.85[ASN][1000 genomes]
rs1204214	0.91[ASN][1000 genomes]
rs1204217	0.92[ASN][1000 genomes]
rs1204219	0.97[ASN][1000 genomes]
rs1204224	0.98[ASN][1000 genomes]
rs1204229	0.96[ASN][1000 genomes]
rs1204232	0.96[ASN][1000 genomes]
rs1204234	0.96[ASN][1000 genomes]
rs1204235	0.96[ASN][1000 genomes]
rs1204237	0.95[ASN][1000 genomes]
rs1204240	0.94[ASN][1000 genomes]
rs1204241	0.93[ASN][1000 genomes]
rs1204246	0.87[ASN][1000 genomes]
rs1204254	0.88[ASN][1000 genomes]
rs12192978	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12205612	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12214124	0.89[ASN][1000 genomes]
rs12662217	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662221	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12662533	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662534	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12662535	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1309311	0.89[ASN][1000 genomes]
rs13216137	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13216246	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1535811	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1535812	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1570623	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1807919	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2014484	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28594083	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28619173	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28716055	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2876328	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34901968	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34957554	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35198802	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35904457	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4715639	0.88[ASN][1000 genomes]
rs6459171	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6906019	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6919520	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6919523	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6927092	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6938479	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72833105	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72833108	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72833112	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72833113	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72833115	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72833116	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72833124	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753981	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755582	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7758088	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7770830	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7771874	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772023	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772769	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357919	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357920	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357925	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9357929	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9367691	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367692	0.96[ASN][1000 genomes]
rs9367693	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9367696	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9367697	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9370532	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370537	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370546	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382632	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382633	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9382634	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382641	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9382651	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9382660	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9382661	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396212	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9396227	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396233	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9464395	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9464398	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475703	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9475705	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13864400-13866800	Weak transcription	Fetal Brain Male	brain
2	chr6:13864400-13872600	Weak transcription	Placenta	Placenta
3	chr6:13865000-13865800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:13865400-13867200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:13865600-13873200	Weak transcription	Fetal Intestine Small	intestine

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