Variant report

Variant	rs1204254
Chromosome Location	chr6:13880832-13880833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13874162..13876058-chr6:13879893..13881410,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10498684	0.96[ASN][1000 genomes]
rs1078046	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10949002	0.80[ASN][1000 genomes]
rs1107758	0.80[ASN][1000 genomes]
rs1107759	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204191	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204195	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204197	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204202	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204205	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1204207	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1204208	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1204209	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1204210	0.90[EUR][1000 genomes]
rs1204214	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1204217	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204219	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1204224	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204229	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204232	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204234	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204235	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204237	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204240	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204241	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1204246	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12192978	0.90[ASN][1000 genomes]
rs12214124	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12662217	0.81[ASN][1000 genomes]
rs12662533	0.80[ASN][1000 genomes]
rs1309311	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1535811	0.80[ASN][1000 genomes]
rs1535812	0.80[ASN][1000 genomes]
rs1570623	0.92[ASN][1000 genomes]
rs1807919	0.83[ASN][1000 genomes]
rs2014484	0.83[ASN][1000 genomes]
rs28594083	0.80[ASN][1000 genomes]
rs28619173	0.80[ASN][1000 genomes]
rs28716055	0.82[ASN][1000 genomes]
rs2876328	0.80[ASN][1000 genomes]
rs34957554	0.81[ASN][1000 genomes]
rs35904457	0.80[ASN][1000 genomes]
rs4715639	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55742155	0.88[ASN][1000 genomes]
rs6459171	0.99[ASN][1000 genomes]
rs6906019	0.80[ASN][1000 genomes]
rs6919520	0.80[ASN][1000 genomes]
rs6919523	0.80[ASN][1000 genomes]
rs6927092	0.80[ASN][1000 genomes]
rs6938479	0.97[ASN][1000 genomes]
rs72833105	0.80[ASN][1000 genomes]
rs72833112	0.81[ASN][1000 genomes]
rs72833113	0.81[ASN][1000 genomes]
rs72833115	0.83[ASN][1000 genomes]
rs72833116	0.83[ASN][1000 genomes]
rs72833124	0.91[ASN][1000 genomes]
rs7753981	0.84[ASN][1000 genomes]
rs7755582	0.80[ASN][1000 genomes]
rs7758088	0.84[ASN][1000 genomes]
rs7770830	0.92[ASN][1000 genomes]
rs7771874	0.92[ASN][1000 genomes]
rs7772023	0.92[ASN][1000 genomes]
rs7772769	0.80[ASN][1000 genomes]
rs9357919	0.80[ASN][1000 genomes]
rs9357920	0.80[ASN][1000 genomes]
rs9357925	0.87[ASN][1000 genomes]
rs9357929	0.87[ASN][1000 genomes]
rs9367691	0.88[ASN][1000 genomes]
rs9367692	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367696	0.92[ASN][1000 genomes]
rs9367697	0.91[ASN][1000 genomes]
rs9370537	0.83[ASN][1000 genomes]
rs9370546	0.90[ASN][1000 genomes]
rs9382633	0.80[ASN][1000 genomes]
rs9382641	0.80[ASN][1000 genomes]
rs9382651	0.90[ASN][1000 genomes]
rs9382660	0.92[ASN][1000 genomes]
rs9382661	0.89[ASN][1000 genomes]
rs9396212	0.80[ASN][1000 genomes]
rs9396227	0.91[ASN][1000 genomes]
rs9396233	0.99[ASN][1000 genomes]
rs9464395	0.90[ASN][1000 genomes]
rs9464398	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420238	chr6:13880473-13885771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13874800-13881800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:13879800-13881000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:13880200-13882600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:13880400-13882000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:13880600-13881600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:13880600-13881600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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