The 2.0 version of rSNPBase

Variant report

Variant rs1309311
Chromosome Location chr6:13860700-13860701
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:13847800-13864000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr6:13859800-13860800 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
3 chr6:13859800-13861000 Active TSS ES-I3 Cell Line embryonic stem cell
4 chr6:13859800-13861000 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
5 chr6:13860000-13860800 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr6:13860000-13860800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr6:13860000-13860800 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
8 chr6:13860000-13860800 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
9 chr6:13860000-13860800 Bivalent Enhancer Primary B cells from cord blood blood
10 chr6:13860000-13860800 Bivalent Enhancer Primary B cells from peripheral blood blood
11 chr6:13860000-13860800 Bivalent Enhancer Primary T cells fromperipheralblood blood
12 chr6:13860000-13860800 Bivalent Enhancer Primary T helper cells PMA-I stimulated --
13 chr6:13860000-13860800 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr6:13860000-13860800 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr6:13860000-13860800 Active TSS Brain Anterior Caudate brain
16 chr6:13860000-13860800 Bivalent/Poised TSS Brain Cingulate Gyrus brain
17 chr6:13860000-13860800 Bivalent/Poised TSS Brain Germinal Matrix brain
18 chr6:13860000-13860800 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
19 chr6:13860000-13860800 Bivalent/Poised TSS Fetal Intestine Small intestine
20 chr6:13860000-13860800 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
21 chr6:13860000-13860800 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
22 chr6:13860000-13860800 Enhancers Lung lung
23 chr6:13860000-13860800 Flanking Bivalent TSS/Enh Psoas Muscle Psoas
24 chr6:13860000-13861000 Active TSS H1 Cell Line embryonic stem cell
25 chr6:13860000-13861000 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
26 chr6:13860000-13861000 Active TSS Fetal Brain Female brain
27 chr6:13860200-13860800 Active TSS ES-UCSF4 Cell Line embryonic stem cell
28 chr6:13860200-13860800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
29 chr6:13860200-13860800 Active TSS Primary T helper naive cells fromperipheralblood blood
30 chr6:13860200-13860800 Bivalent/Poised TSS Primary T helper 17 cells PMA-I stimulated --
31 chr6:13860200-13860800 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr6:13860200-13860800 Bivalent/Poised TSS Brain Hippocampus Middle brain
33 chr6:13860200-13860800 Active TSS Brain Inferior Temporal Lobe brain
34 chr6:13860200-13860800 Bivalent Enhancer Esophagus oesophagus
35 chr6:13860200-13860800 Bivalent/Poised TSS Fetal Intestine Large intestine
36 chr6:13860200-13860800 Bivalent/Poised TSS Left Ventricle heart
37 chr6:13860200-13860800 Active TSS Right Ventricle heart
38 chr6:13860200-13860800 Bivalent/Poised TSS Thymus Thymus
39 chr6:13860200-13860800 Bivalent/Poised TSS NHEK skin
40 chr6:13860200-13861000 Active TSS HUES48 Cell Line embryonic stem cell
41 chr6:13860200-13861000 Active TSS iPS-15b Cell Line embryonic stem cell
42 chr6:13860200-13861000 Active TSS iPS-18 Cell Line embryonic stem cell
43 chr6:13860200-13861000 Bivalent/Poised TSS Primary T cells from cord blood blood
44 chr6:13860200-13861000 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
45 chr6:13860400-13860800 Bivalent Enhancer Primary monocytes fromperipheralblood blood
46 chr6:13860400-13860800 Bivalent/Poised TSS Cortex derived primary cultured neurospheres brain
47 chr6:13860400-13860800 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin03 Skin
48 chr6:13860400-13860800 Bivalent/Poised TSS Primary mononuclear cells fromperipheralblood Blood
49 chr6:13860400-13860800 Bivalent Enhancer Fetal Thymus thymus
50 chr6:13860600-13860800 Bivalent Enhancer Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015