Variant report

Variant	rs1204241
Chromosome Location	chr6:13873200-13873201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13865780..13870823-chr6:13871256..13876608,7	MCF-7	breast:
2	chr6:13812945..13816149-chr6:13872114..13877655,8	MCF-7	breast:
3	chr6:13872481..13874307-chr6:13882268..13884825,2	K562	blood:
4	chr6:13711607..13713134-chr6:13872489..13874255,2	MCF-7	breast:
5	chr6:13812471..13815841-chr6:13872539..13875076,5	MCF-7	breast:
6	chr6:13710997..13713302-chr6:13872875..13875469,2	MCF-7	breast:
7	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:
8	chr6:13849255..13851756-chr6:13872753..13875703,2	K562	blood:
9	chr6:13872400..13875696-chr6:13875999..13878968,3	MCF-7	breast:
10	chr6:13872608..13875601-chr6:13884105..13886599,2	MCF-7	breast:
11	chr6:13865916..13870763-chr6:13872402..13875554,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction
ENSG00000050393	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10498684	0.92[ASN][1000 genomes]
rs1078046	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10949002	0.85[ASN][1000 genomes]
rs1107758	0.85[ASN][1000 genomes]
rs1107759	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1204184	0.80[ASN][1000 genomes]
rs1204191	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1204195	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1204197	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1204202	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1204205	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1204207	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204208	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204209	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1204210	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1204214	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1204217	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1204219	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204224	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1204229	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204232	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204234	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204235	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204237	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204240	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204246	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204254	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12192978	0.96[ASN][1000 genomes]
rs12205612	0.84[ASN][1000 genomes]
rs12214124	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12662217	0.85[ASN][1000 genomes]
rs12662533	0.85[ASN][1000 genomes]
rs12662534	0.84[ASN][1000 genomes]
rs12662535	0.84[ASN][1000 genomes]
rs1309311	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13216137	0.84[ASN][1000 genomes]
rs13216246	0.84[ASN][1000 genomes]
rs1535811	0.85[ASN][1000 genomes]
rs1535812	0.85[ASN][1000 genomes]
rs1570623	0.96[ASN][1000 genomes]
rs1807919	0.88[ASN][1000 genomes]
rs2014484	0.88[ASN][1000 genomes]
rs28594083	0.85[ASN][1000 genomes]
rs28619173	0.85[ASN][1000 genomes]
rs28716055	0.86[ASN][1000 genomes]
rs2876328	0.85[ASN][1000 genomes]
rs34901968	0.83[ASN][1000 genomes]
rs34957554	0.85[ASN][1000 genomes]
rs35198802	0.83[ASN][1000 genomes]
rs35904457	0.85[ASN][1000 genomes]
rs4715639	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55742155	0.93[ASN][1000 genomes]
rs6459171	0.94[ASN][1000 genomes]
rs6906019	0.85[ASN][1000 genomes]
rs6919520	0.85[ASN][1000 genomes]
rs6919523	0.85[ASN][1000 genomes]
rs6927092	0.85[ASN][1000 genomes]
rs6938479	0.92[ASN][1000 genomes]
rs72833105	0.85[ASN][1000 genomes]
rs72833108	0.83[ASN][1000 genomes]
rs72833112	0.85[ASN][1000 genomes]
rs72833113	0.85[ASN][1000 genomes]
rs72833115	0.88[ASN][1000 genomes]
rs72833116	0.88[ASN][1000 genomes]
rs72833124	0.97[ASN][1000 genomes]
rs7753981	0.88[ASN][1000 genomes]
rs7755582	0.85[ASN][1000 genomes]
rs7758088	0.88[ASN][1000 genomes]
rs7770830	0.96[ASN][1000 genomes]
rs7771874	0.96[ASN][1000 genomes]
rs7772023	0.96[ASN][1000 genomes]
rs7772769	0.85[ASN][1000 genomes]
rs9357919	0.85[ASN][1000 genomes]
rs9357920	0.85[ASN][1000 genomes]
rs9357925	0.92[ASN][1000 genomes]
rs9357929	0.93[ASN][1000 genomes]
rs9367691	0.92[ASN][1000 genomes]
rs9367692	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9367696	0.96[ASN][1000 genomes]
rs9367697	0.97[ASN][1000 genomes]
rs9370532	0.84[ASN][1000 genomes]
rs9370537	0.88[ASN][1000 genomes]
rs9370546	0.96[ASN][1000 genomes]
rs9382632	0.83[ASN][1000 genomes]
rs9382633	0.85[ASN][1000 genomes]
rs9382634	0.84[ASN][1000 genomes]
rs9382641	0.85[ASN][1000 genomes]
rs9382651	0.94[ASN][1000 genomes]
rs9382660	0.96[ASN][1000 genomes]
rs9382661	0.95[ASN][1000 genomes]
rs9396212	0.85[ASN][1000 genomes]
rs9396227	0.96[ASN][1000 genomes]
rs9396233	0.94[ASN][1000 genomes]
rs9464395	0.94[ASN][1000 genomes]
rs9464398	0.99[ASN][1000 genomes]
rs9475703	0.82[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13865600-13873200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:13868400-13873400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:13870800-13873600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:13870800-13873600	Weak transcription	Fetal Lung	lung
5	chr6:13871000-13873800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:13871200-13873200	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:13871200-13873400	Weak transcription	Fetal Brain Male	brain
8	chr6:13871200-13873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:13871400-13873600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:13871400-13873800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:13872600-13873200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:13872600-13873400	Enhancers	Brain Substantia Nigra	brain
13	chr6:13872600-13873600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:13872600-13873600	Weak transcription	Brain Angular Gyrus	brain
15	chr6:13872600-13873600	Enhancers	Placenta	Placenta
16	chr6:13872600-13874600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:13872800-13873200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:13872800-13873400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:13872800-13873600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr6:13872800-13873600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:13872800-13874000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr6:13872800-13874200	Active TSS	Colon Smooth Muscle	Colon
23	chr6:13873000-13873400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
24	chr6:13873000-13873400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:13873000-13873400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:13873000-13873400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr6:13873000-13873600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:13873000-13873600	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:13873000-13873600	Enhancers	Fetal Thymus	thymus
30	chr6:13873000-13873600	Enhancers	Pancreas	Pancrea
31	chr6:13873200-13873600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr6:13873200-13873600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:13873200-13873600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr6:13873200-13873600	Enhancers	Primary B cells from cord blood	blood
35	chr6:13873200-13873600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:13873200-13873600	Enhancers	Brain Hippocampus Middle	brain
37	chr6:13873200-13873600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:13873200-13873600	Enhancers	Fetal Intestine Large	intestine
39	chr6:13873200-13873600	Enhancers	Fetal Intestine Small	intestine
40	chr6:13873200-13873600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:13873200-13873600	Enhancers	K562	blood
42	chr6:13873200-13873800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr6:13873200-13873800	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr6:13873200-13873800	Enhancers	Stomach Mucosa	stomach
45	chr6:13873200-13874800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr6:13873200-13874800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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