Variant report

Variant	rs1204224
Chromosome Location	chr6:13866326-13866327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13852220..13855025-chr6:13864513..13866779,2	MCF-7	breast:
2	chr6:13865916..13870763-chr6:13872402..13875554,5	MCF-7	breast:
3	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:
4	chr6:13865780..13870823-chr6:13871256..13876608,7	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10498684	0.90[ASN][1000 genomes]
rs1078046	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10949002	0.89[ASN][1000 genomes]
rs1107758	0.89[ASN][1000 genomes]
rs1107759	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204184	0.85[ASN][1000 genomes]
rs1204191	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204195	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204197	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204202	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204205	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1204207	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1204208	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1204209	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1204210	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1204214	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1204217	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204219	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204229	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204235	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204237	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1204240	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204241	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1204246	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1204250	0.81[GIH][hapmap]
rs1204254	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12192978	0.95[ASN][1000 genomes]
rs12205612	0.88[ASN][1000 genomes]
rs12214124	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662217	0.90[ASN][1000 genomes]
rs12662221	0.84[ASN][1000 genomes]
rs12662533	0.89[ASN][1000 genomes]
rs12662534	0.89[ASN][1000 genomes]
rs12662535	0.89[ASN][1000 genomes]
rs1309311	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13216137	0.88[ASN][1000 genomes]
rs13216246	0.89[ASN][1000 genomes]
rs1535811	0.89[ASN][1000 genomes]
rs1535812	0.89[ASN][1000 genomes]
rs1570623	0.97[ASN][1000 genomes]
rs1807919	0.92[ASN][1000 genomes]
rs2014484	0.92[ASN][1000 genomes]
rs28594083	0.89[ASN][1000 genomes]
rs28619173	0.89[ASN][1000 genomes]
rs28716055	0.91[ASN][1000 genomes]
rs2876328	0.89[ASN][1000 genomes]
rs34901968	0.87[ASN][1000 genomes]
rs34957554	0.90[ASN][1000 genomes]
rs35198802	0.87[ASN][1000 genomes]
rs35904457	0.89[ASN][1000 genomes]
rs4715639	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55742155	0.98[ASN][1000 genomes]
rs6459171	0.90[ASN][1000 genomes]
rs6906019	0.89[ASN][1000 genomes]
rs6919520	0.89[ASN][1000 genomes]
rs6919523	0.89[ASN][1000 genomes]
rs6927092	0.89[ASN][1000 genomes]
rs6938479	0.89[ASN][1000 genomes]
rs72833105	0.89[ASN][1000 genomes]
rs72833108	0.87[ASN][1000 genomes]
rs72833112	0.90[ASN][1000 genomes]
rs72833113	0.90[ASN][1000 genomes]
rs72833115	0.92[ASN][1000 genomes]
rs72833116	0.92[ASN][1000 genomes]
rs72833124	0.96[ASN][1000 genomes]
rs7753981	0.93[ASN][1000 genomes]
rs7755582	0.89[ASN][1000 genomes]
rs7758088	0.93[ASN][1000 genomes]
rs7770830	0.97[ASN][1000 genomes]
rs7771874	0.97[ASN][1000 genomes]
rs7772023	0.97[ASN][1000 genomes]
rs7772769	0.89[ASN][1000 genomes]
rs9357919	0.89[ASN][1000 genomes]
rs9357920	0.89[ASN][1000 genomes]
rs9357925	0.96[ASN][1000 genomes]
rs9357929	0.92[ASN][1000 genomes]
rs9367691	0.97[ASN][1000 genomes]
rs9367692	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9367693	0.80[ASN][1000 genomes]
rs9367696	0.97[ASN][1000 genomes]
rs9367697	0.96[ASN][1000 genomes]
rs9370532	0.89[ASN][1000 genomes]
rs9370537	0.92[ASN][1000 genomes]
rs9370546	0.95[ASN][1000 genomes]
rs9382632	0.88[ASN][1000 genomes]
rs9382633	0.89[ASN][1000 genomes]
rs9382634	0.89[ASN][1000 genomes]
rs9382641	0.89[ASN][1000 genomes]
rs9382651	0.99[ASN][1000 genomes]
rs9382660	0.97[ASN][1000 genomes]
rs9382661	0.94[ASN][1000 genomes]
rs9396212	0.89[ASN][1000 genomes]
rs9396227	0.98[ASN][1000 genomes]
rs9396233	0.90[ASN][1000 genomes]
rs9464395	0.99[ASN][1000 genomes]
rs9464398	0.94[ASN][1000 genomes]
rs9475703	0.86[ASN][1000 genomes]
rs9475705	0.82[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1204224	NOL7	cis	cerebellum	SCAN
rs1204224	C8orf86	trans	cerebellum	SCAN
rs1204224	RANBP9	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13864400-13866800	Weak transcription	Fetal Brain Male	brain
2	chr6:13864400-13872600	Weak transcription	Placenta	Placenta
3	chr6:13865400-13867200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:13865600-13873200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:13866000-13867400	Enhancers	Fetal Brain Female	brain
6	chr6:13866200-13867200	Enhancers	Primary monocytes fromperipheralblood	blood

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