Variant report

Variant	rs12082005
Chromosome Location	chr1:61563054-61563055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61522323..61524411-chr1:61562125..61565012,2	K562	blood:
2	chr1:61521000..61524411-chr1:61562125..61565012,3	K562	blood:
3	chr1:61562916..61564563-chr1:61569793..61571551,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10493302	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889206	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133298	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1391432	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1909118	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2050544	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2807990	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs334735	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs334736	0.94[EUR][1000 genomes]
rs334738	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs384893	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4430360	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6670604	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9436630	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61554600-61565800	Weak transcription	Gastric	stomach
2	chr1:61554600-61567000	Weak transcription	NHLF	lung
3	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
4	chr1:61554800-61563200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:61555400-61565800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:61556600-61567000	Weak transcription	HSMMtube	muscle
8	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:61557800-61564200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:61558600-61563400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:61558600-61568400	Weak transcription	Small Intestine	intestine
12	chr1:61558600-61581200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:61558600-61586000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:61559000-61582000	Weak transcription	Hela-S3	cervix
15	chr1:61559600-61569800	Weak transcription	K562	blood
16	chr1:61560000-61563200	Weak transcription	Stomach Mucosa	stomach
17	chr1:61560000-61566800	Weak transcription	Right Atrium	heart
18	chr1:61560400-61564000	Weak transcription	Brain Germinal Matrix	brain
19	chr1:61560400-61566000	Weak transcription	Psoas Muscle	Psoas
20	chr1:61560400-61575800	Weak transcription	Fetal Stomach	stomach
21	chr1:61560600-61563600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:61560800-61563200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:61560800-61567800	Enhancers	Liver	Liver
24	chr1:61561000-61563200	Weak transcription	Osteobl	bone
25	chr1:61561000-61567200	Weak transcription	Aorta	Aorta
26	chr1:61561200-61563200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:61561200-61563200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:61561200-61563200	Weak transcription	HepG2	liver
29	chr1:61561200-61563600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:61561200-61567000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr1:61561400-61563200	Weak transcription	Adipose Nuclei	Adipose
32	chr1:61561400-61563200	Weak transcription	Brain Substantia Nigra	brain
33	chr1:61561400-61563200	Weak transcription	Fetal Heart	heart
34	chr1:61561400-61563200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr1:61561400-61565400	Enhancers	Fetal Brain Male	brain
36	chr1:61561400-61565800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr1:61561400-61567200	Weak transcription	Fetal Lung	lung
38	chr1:61561400-61576200	Weak transcription	HUVEC	blood vessel
39	chr1:61561600-61567200	Weak transcription	A549	lung
40	chr1:61562600-61563200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr1:61562600-61563200	Weak transcription	Ovary	ovary
42	chr1:61562600-61566200	Weak transcription	Left Ventricle	heart
43	chr1:61562800-61563200	Flanking Active TSS	Fetal Brain Female	brain
44	chr1:61562800-61563200	Enhancers	NH-A	brain
45	chr1:61562800-61563600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:61562800-61563600	Enhancers	NHDF-Ad	bronchial
47	chr1:61562800-61563800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:61562800-61563800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:61562800-61563800	Enhancers	NHEK	skin
50	chr1:61562800-61564400	Enhancers	Cortex derived primary cultured neurospheres	brain

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