Variant report

Variant	rs12133298
Chromosome Location	chr1:61562140-61562141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61560731..61562508-chr1:61563952..61565841,2	K562	blood:
2	chr1:61560444..61562508-chr1:61563542..61567587,4	K562	blood:
3	chr1:61560205..61563000-chr1:61570477..61572307,2	K562	blood:
4	chr1:61522323..61524411-chr1:61562125..61565012,2	K562	blood:
5	chr1:61521000..61524411-chr1:61562125..61565012,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10493302	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10889206	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12082005	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1391432	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909118	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2050544	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2807990	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334735	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs334736	0.89[EUR][1000 genomes]
rs334738	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs384893	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4430360	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6670604	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9436630	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61554600-61563000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:61554600-61565800	Weak transcription	Gastric	stomach
3	chr1:61554600-61567000	Weak transcription	NHLF	lung
4	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
5	chr1:61554800-61563200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:61555000-61563000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:61555400-61565800	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:61555800-61563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:61556600-61563000	Weak transcription	HSMM	muscle
11	chr1:61556600-61567000	Weak transcription	HSMMtube	muscle
12	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:61557800-61564200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:61558600-61562800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:61558600-61563000	Weak transcription	Right Ventricle	heart
16	chr1:61558600-61563400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:61558600-61568400	Weak transcription	Small Intestine	intestine
18	chr1:61558600-61581200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:61558600-61586000	Weak transcription	Fetal Intestine Small	intestine
20	chr1:61559000-61582000	Weak transcription	Hela-S3	cervix
21	chr1:61559600-61562800	Weak transcription	NHEK	skin
22	chr1:61559600-61569800	Weak transcription	K562	blood
23	chr1:61559800-61562800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:61560000-61563200	Weak transcription	Stomach Mucosa	stomach
25	chr1:61560000-61566800	Weak transcription	Right Atrium	heart
26	chr1:61560400-61564000	Weak transcription	Brain Germinal Matrix	brain
27	chr1:61560400-61566000	Weak transcription	Psoas Muscle	Psoas
28	chr1:61560400-61575800	Weak transcription	Fetal Stomach	stomach
29	chr1:61560600-61563600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr1:61560800-61562800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:61560800-61563000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:61560800-61563200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:61560800-61567800	Enhancers	Liver	Liver
34	chr1:61561000-61563200	Weak transcription	Osteobl	bone
35	chr1:61561000-61567200	Weak transcription	Aorta	Aorta
36	chr1:61561200-61562200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:61561200-61562600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr1:61561200-61562800	Weak transcription	Fetal Brain Female	brain
39	chr1:61561200-61562800	Weak transcription	NHDF-Ad	bronchial
40	chr1:61561200-61563200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:61561200-61563200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr1:61561200-61563200	Weak transcription	HepG2	liver
43	chr1:61561200-61563600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:61561200-61567000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr1:61561400-61562800	Weak transcription	Brain Angular Gyrus	brain
46	chr1:61561400-61562800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:61561400-61562800	Weak transcription	Brain Hippocampus Middle	brain
48	chr1:61561400-61563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:61561400-61563000	Weak transcription	Brain Anterior Caudate	brain
50	chr1:61561400-61563200	Weak transcription	Adipose Nuclei	Adipose

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