Variant report

Variant	rs334736
Chromosome Location	chr1:61593810-61593811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61592937..61594569-chr1:61597659..61600079,2	K562	blood:
2	chr1:61582646..61586479-chr1:61593014..61597030,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INADL-2	chr1:61593091-61597315	ENSG00000248141

rs_ID	r²[population]
rs10493302	0.94[EUR][1000 genomes]
rs10889206	0.89[EUR][1000 genomes]
rs12082005	0.94[EUR][1000 genomes]
rs12133298	0.89[EUR][1000 genomes]
rs1391432	0.89[EUR][1000 genomes]
rs1909118	0.88[EUR][1000 genomes]
rs2050544	0.89[EUR][1000 genomes]
rs2807990	0.89[EUR][1000 genomes]
rs334735	0.89[EUR][1000 genomes]
rs334738	0.86[EUR][1000 genomes]
rs384893	0.87[EUR][1000 genomes]
rs4430360	0.88[EUR][1000 genomes]
rs6670604	0.89[EUR][1000 genomes]
rs9436630	0.89[EUR][1000 genomes]

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61581400-61604600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61582400-61604800	Weak transcription	Hela-S3	cervix
3	chr1:61584600-61597800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:61585000-61597400	Weak transcription	Ovary	ovary
5	chr1:61586200-61597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:61586400-61597000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:61586600-61598200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:61586800-61597400	Weak transcription	NHEK	skin
9	chr1:61586800-61597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:61587000-61597600	Weak transcription	NHLF	lung
11	chr1:61587000-61598400	Weak transcription	NHDF-Ad	bronchial
12	chr1:61587000-61606800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:61588200-61597400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:61588400-61596200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:61590000-61597600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:61590200-61597000	Weak transcription	HepG2	liver
17	chr1:61590600-61596000	Weak transcription	A549	lung
18	chr1:61590600-61597000	Weak transcription	Right Ventricle	heart
19	chr1:61591000-61595800	Weak transcription	Fetal Brain Female	brain
20	chr1:61591000-61596200	Weak transcription	Fetal Lung	lung
21	chr1:61591000-61597400	Weak transcription	Aorta	Aorta
22	chr1:61591600-61597000	Weak transcription	Brain Angular Gyrus	brain
23	chr1:61591600-61597800	Weak transcription	Right Atrium	heart
24	chr1:61591800-61596200	Weak transcription	Liver	Liver
25	chr1:61591800-61596200	Weak transcription	Brain Germinal Matrix	brain
26	chr1:61591800-61597000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:61591800-61597000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:61591800-61597200	Weak transcription	Adipose Nuclei	Adipose
29	chr1:61591800-61597400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:61591800-61604600	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:61592000-61595600	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:61592000-61598000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr1:61592200-61595600	Weak transcription	Fetal Brain Male	brain
34	chr1:61592200-61596200	Weak transcription	Psoas Muscle	Psoas
35	chr1:61592200-61596400	Weak transcription	Brain Hippocampus Middle	brain
36	chr1:61592200-61597000	Weak transcription	Brain Substantia Nigra	brain
37	chr1:61592400-61596200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr1:61592400-61597000	Weak transcription	Brain Anterior Caudate	brain
39	chr1:61592600-61594200	Enhancers	Left Ventricle	heart
40	chr1:61592600-61596200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:61593000-61594200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:61593200-61597000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr1:61593400-61594400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:61593400-61595600	Weak transcription	Fetal Heart	heart
45	chr1:61593800-61594000	ZNF genes & repeats	Fetal Stomach	stomach

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