Variant report

Variant	rs12091344
Chromosome Location	chr1:94633910-94633911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11581939	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12067736	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12075780	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12077584	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12077639	0.96[ASN][1000 genomes]
rs12089919	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17111161	0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17111205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111206	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2150268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2774920	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs28796027	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789689	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.87[ASN][1000 genomes]
rs3789691	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789692	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673184	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6677288	0.91[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6682149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs871661	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94626600-94635800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94626800-94634800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94626800-94635200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:94626800-94636800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:94626800-94636800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:94626800-94639200	Weak transcription	NHLF	lung
7	chr1:94626800-94639400	Weak transcription	Psoas Muscle	Psoas
8	chr1:94626800-94639400	Weak transcription	NHEK	skin
9	chr1:94626800-94643400	Weak transcription	Fetal Heart	heart
10	chr1:94627000-94634200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:94627000-94634200	Weak transcription	HSMM	muscle
12	chr1:94627000-94634200	Weak transcription	HUVEC	blood vessel
13	chr1:94627000-94634400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:94627000-94634600	Weak transcription	Osteobl	bone
15	chr1:94627000-94636200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:94627000-94639400	Weak transcription	HSMMtube	muscle
17	chr1:94627200-94634200	Weak transcription	NH-A	brain
18	chr1:94627200-94634400	Weak transcription	NHDF-Ad	bronchial
19	chr1:94627400-94635000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:94629800-94639400	Weak transcription	Spleen	Spleen
21	chr1:94630800-94639400	Weak transcription	Gastric	stomach
22	chr1:94631400-94639400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:94631800-94636600	Weak transcription	Fetal Kidney	kidney
24	chr1:94631800-94639800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:94631800-94646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:94632200-94639400	Weak transcription	Pancreas	Pancrea
27	chr1:94632400-94636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:94633000-94634600	Weak transcription	HMEC	breast
29	chr1:94633000-94636200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:94633200-94634400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:94633200-94634800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:94633200-94639400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:94633400-94636200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:94633400-94636600	Weak transcription	Adipose Nuclei	Adipose
35	chr1:94633400-94639400	Weak transcription	Left Ventricle	heart
36	chr1:94633600-94637000	Weak transcription	Fetal Muscle Leg	muscle

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