Variant report

Variant	rs6677288
Chromosome Location	chr1:94673187-94673188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11581939	0.95[CHD][hapmap]
rs12067736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12075780	0.83[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs12077584	1.00[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12077639	0.88[ASN][1000 genomes]
rs12089919	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12091344	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411702	0.92[CHB][hapmap];0.97[ASN][1000 genomes]
rs17111161	0.83[CHB][hapmap];0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs17111205	0.82[CEU][hapmap];0.92[CHB][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17111206	0.91[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2150268	0.82[CEU][hapmap];0.92[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2774920	0.92[CHB][hapmap];0.95[CHD][hapmap];0.88[ASN][1000 genomes]
rs28796027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789689	0.91[CHB][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3789691	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789692	0.81[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673184	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6682149	0.85[CEU][hapmap];0.92[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871661	0.83[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366175	chr1:94673160-94673388	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
4	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
5	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
7	chr1:94647200-94675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:94647800-94676200	Weak transcription	Small Intestine	intestine
9	chr1:94649400-94684000	Weak transcription	Right Ventricle	heart
10	chr1:94649600-94680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:94660400-94681000	Weak transcription	Fetal Heart	heart
12	chr1:94663200-94674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:94665400-94673400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:94666600-94674600	Strong transcription	NHDF-Ad	bronchial
15	chr1:94668200-94673200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:94668400-94674400	Strong transcription	NHEK	skin
17	chr1:94668400-94674800	Weak transcription	Aorta	Aorta
18	chr1:94668400-94687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:94668600-94684400	Weak transcription	Psoas Muscle	Psoas
20	chr1:94668800-94673400	Strong transcription	HMEC	breast
21	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:94669200-94681200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:94669400-94676400	Genic enhancers	HUVEC	blood vessel
24	chr1:94669400-94687600	Weak transcription	Gastric	stomach
25	chr1:94669800-94675400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:94670000-94673400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr1:94670000-94673400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr1:94670000-94673400	Weak transcription	Left Ventricle	heart
29	chr1:94670000-94673400	Weak transcription	Lung	lung
30	chr1:94670000-94673400	Weak transcription	HSMMtube	muscle
31	chr1:94670000-94684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr1:94670400-94674000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr1:94670400-94675600	Weak transcription	HepG2	liver
34	chr1:94670400-94684400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr1:94670600-94679200	Weak transcription	NHLF	lung
36	chr1:94670600-94684400	Weak transcription	Fetal Kidney	kidney
37	chr1:94670800-94674600	Weak transcription	A549	lung
38	chr1:94670800-94675000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:94670800-94675800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:94670800-94686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:94670800-94686400	Weak transcription	Placenta	Placenta
42	chr1:94671800-94674200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:94672200-94673400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:94672200-94673400	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr1:94672200-94673400	Weak transcription	NH-A	brain
46	chr1:94672200-94673400	Strong transcription	Osteobl	bone
47	chr1:94672200-94673800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:94672200-94678200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:94672400-94673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:94672400-94673400	Weak transcription	Fetal Muscle Leg	muscle

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