Variant report

Variant	rs3789691
Chromosome Location	chr1:94660609-94660610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11581939	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12067736	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12075780	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12077584	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077639	0.91[ASN][1000 genomes]
rs12089919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12091344	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1411702	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17111161	0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17111205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111206	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2150268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2774920	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs28796027	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789689	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3789692	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673184	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677288	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6682149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871661	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94634200-94660800	Strong transcription	NH-A	brain
2	chr1:94634200-94661800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:94634600-94662000	Strong transcription	HMEC	breast
5	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:94638400-94669200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
8	chr1:94640200-94667800	Weak transcription	Gastric	stomach
9	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
10	chr1:94643400-94668800	Weak transcription	Stomach Mucosa	stomach
11	chr1:94644600-94664400	Weak transcription	A549	lung
12	chr1:94644800-94670000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:94645000-94667000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
16	chr1:94645200-94663600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:94647000-94667800	Weak transcription	Aorta	Aorta
18	chr1:94647000-94667800	Weak transcription	Lung	lung
19	chr1:94647200-94662800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:94647200-94667000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:94647200-94667600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:94647200-94669200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:94647200-94675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:94647400-94669200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr1:94647800-94668000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:94647800-94676200	Weak transcription	Small Intestine	intestine
27	chr1:94648800-94661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:94649400-94684000	Weak transcription	Right Ventricle	heart
29	chr1:94649600-94680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:94652200-94667600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:94653400-94661400	Strong transcription	NHEK	skin
32	chr1:94653600-94668200	Weak transcription	Placenta	Placenta
33	chr1:94653800-94665000	Weak transcription	Psoas Muscle	Psoas
34	chr1:94653800-94665200	Weak transcription	Fetal Kidney	kidney
35	chr1:94654600-94665200	Weak transcription	HSMMtube	muscle
36	chr1:94654800-94666800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:94655000-94666200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr1:94655800-94664600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:94656200-94664000	Genic enhancers	HUVEC	blood vessel
40	chr1:94656600-94664800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:94656600-94665000	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:94657000-94666600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr1:94657000-94672000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:94657200-94666000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr1:94657400-94665200	Weak transcription	HepG2	liver
46	chr1:94657600-94663600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr1:94658000-94663200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:94658200-94663200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:94658400-94664800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr1:94658400-94664800	Weak transcription	Adipose Nuclei	Adipose

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