Variant report

Variant	rs6682149
Chromosome Location	chr1:94676268-94676269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11581939	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12067736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12075780	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12077584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12077639	0.88[ASN][1000 genomes]
rs12089919	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12091344	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17111161	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17111205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17111206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2150268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2774920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs28796027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789689	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs3789691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789692	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673184	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6677288	0.85[CEU][hapmap];0.92[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871661	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
2	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
3	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
5	chr1:94649400-94684000	Weak transcription	Right Ventricle	heart
6	chr1:94649600-94680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:94660400-94681000	Weak transcription	Fetal Heart	heart
8	chr1:94668400-94687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:94668600-94684400	Weak transcription	Psoas Muscle	Psoas
10	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:94669200-94681200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:94669400-94676400	Genic enhancers	HUVEC	blood vessel
13	chr1:94669400-94687600	Weak transcription	Gastric	stomach
14	chr1:94670000-94684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:94670400-94684400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:94670600-94679200	Weak transcription	NHLF	lung
17	chr1:94670600-94684400	Weak transcription	Fetal Kidney	kidney
18	chr1:94670800-94686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:94670800-94686400	Weak transcription	Placenta	Placenta
20	chr1:94672200-94678200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:94673400-94678000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:94673800-94680400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:94673800-94682800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:94673800-94683000	Weak transcription	Left Ventricle	heart
25	chr1:94673800-94684400	Weak transcription	Lung	lung
26	chr1:94673800-94698600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:94674000-94697000	Weak transcription	HSMMtube	muscle
29	chr1:94674200-94678600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:94674400-94676600	Strong transcription	HSMM	muscle
31	chr1:94675400-94676400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:94675400-94681000	Strong transcription	NHDF-Ad	bronchial
33	chr1:94675400-94684400	Weak transcription	Adipose Nuclei	Adipose
34	chr1:94675600-94676400	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr1:94675600-94676600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:94675600-94677000	Strong transcription	Osteobl	bone
37	chr1:94675600-94680200	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr1:94675800-94676400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
39	chr1:94675800-94676400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:94675800-94676800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:94675800-94677200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr1:94675800-94678600	Weak transcription	NHEK	skin
43	chr1:94675800-94679200	Weak transcription	HMEC	breast
44	chr1:94675800-94680000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:94675800-94681400	Weak transcription	Liver	Liver
46	chr1:94676000-94679800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:94676200-94676400	Active TSS	Small Intestine	intestine
48	chr1:94676200-94676400	ZNF genes & repeats	HepG2	liver
49	chr1:94676200-94677800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:94676200-94679000	Weak transcription	NH-A	brain

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