Variant report

Variant	rs17111206
Chromosome Location	chr1:94646439-94646440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11581939	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12067736	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12075780	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12077584	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12077639	0.93[ASN][1000 genomes]
rs12089919	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12091344	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1411702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17111161	0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17111205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2774920	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs28796027	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789689	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs3789691	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789692	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673184	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6677288	0.91[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6682149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs871661	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94631800-94646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:94634200-94656600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:94634200-94658400	Strong transcription	HSMM	muscle
4	chr1:94634200-94660800	Strong transcription	NH-A	brain
5	chr1:94634200-94661800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:94634400-94646600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:94634400-94660400	Strong transcription	NHDF-Ad	bronchial
9	chr1:94634600-94662000	Strong transcription	HMEC	breast
10	chr1:94635000-94646800	Weak transcription	Esophagus	oesophagus
11	chr1:94635000-94658000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:94636000-94658400	Strong transcription	Liver	Liver
13	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:94636600-94647400	Strong transcription	Adipose Nuclei	Adipose
15	chr1:94637600-94650800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:94637800-94648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:94637800-94656200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:94638200-94654400	Weak transcription	Ovary	ovary
19	chr1:94638400-94647400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:94638400-94647800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:94638400-94669200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:94638800-94647400	Strong transcription	Fetal Muscle Trunk	muscle
23	chr1:94639000-94647400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:94639000-94647600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:94639200-94649000	Weak transcription	Right Atrium	heart
26	chr1:94639400-94646800	Strong transcription	Left Ventricle	heart
27	chr1:94639400-94651200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:94640000-94650200	Weak transcription	Psoas Muscle	Psoas
29	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
30	chr1:94640200-94647000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:94640200-94648800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:94640200-94667800	Weak transcription	Gastric	stomach
33	chr1:94640800-94647200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:94641800-94657600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:94642200-94646800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr1:94642200-94650800	Weak transcription	Colon Smooth Muscle	Colon
37	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
38	chr1:94642600-94646800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr1:94642600-94647200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:94642800-94647200	Strong transcription	NHLF	lung
41	chr1:94643000-94647000	Strong transcription	Aorta	Aorta
42	chr1:94643200-94647000	Strong transcription	Lung	lung
43	chr1:94643200-94652000	Strong transcription	NHEK	skin
44	chr1:94643400-94668800	Weak transcription	Stomach Mucosa	stomach
45	chr1:94643600-94652800	Strong transcription	HepG2	liver
46	chr1:94644600-94664400	Weak transcription	A549	lung
47	chr1:94644800-94648800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr1:94644800-94648800	Weak transcription	Right Ventricle	heart
49	chr1:94644800-94657600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr1:94644800-94657800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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