Variant report

Variant	rs6673184
Chromosome Location	chr1:94669307-94669308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11581939	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12067736	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12075780	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12077584	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077639	0.91[ASN][1000 genomes]
rs12089919	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12091344	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1411702	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17111161	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17111205	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111206	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2150268	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2774920	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs28796027	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789689	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3789691	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789692	1.00[CEU][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6677288	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6682149	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871661	1.00[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
4	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
5	chr1:94644800-94670000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
8	chr1:94647200-94675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:94647800-94676200	Weak transcription	Small Intestine	intestine
10	chr1:94649400-94684000	Weak transcription	Right Ventricle	heart
11	chr1:94649600-94680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:94657000-94672000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:94660400-94681000	Weak transcription	Fetal Heart	heart
14	chr1:94662000-94670400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:94663200-94672400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:94663200-94673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:94663200-94674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:94663800-94672200	Strong transcription	NH-A	brain
19	chr1:94664800-94671000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:94664800-94672400	Strong transcription	Adipose Nuclei	Adipose
21	chr1:94664800-94672800	Strong transcription	HSMM	muscle
22	chr1:94665200-94670400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:94665200-94670400	Strong transcription	HepG2	liver
24	chr1:94665400-94673400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:94665600-94671800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:94666000-94669400	Strong transcription	HUVEC	blood vessel
27	chr1:94666000-94670400	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:94666200-94672200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:94666600-94670000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr1:94666600-94674600	Strong transcription	NHDF-Ad	bronchial
31	chr1:94666800-94670800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:94666800-94671200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr1:94666800-94671400	Strong transcription	Osteobl	bone
34	chr1:94667000-94670000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:94667000-94670000	Strong transcription	Left Ventricle	heart
36	chr1:94667000-94670400	Strong transcription	Fetal Muscle Leg	muscle
37	chr1:94667000-94670800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:94667600-94670200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:94667800-94669400	Strong transcription	Gastric	stomach
40	chr1:94667800-94670000	Strong transcription	Lung	lung
41	chr1:94667800-94670000	Strong transcription	HSMMtube	muscle
42	chr1:94667800-94670600	Strong transcription	NHLF	lung
43	chr1:94668200-94669800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:94668200-94670800	Strong transcription	Placenta	Placenta
45	chr1:94668200-94673200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:94668400-94669600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:94668400-94670000	Weak transcription	Fetal Kidney	kidney
48	chr1:94668400-94671800	Strong transcription	Liver	Liver
49	chr1:94668400-94674400	Strong transcription	NHEK	skin
50	chr1:94668400-94674800	Weak transcription	Aorta	Aorta

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