Variant report

Variant	rs12106001
Chromosome Location	chr20:25692619-25692620
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1076690	0.92[ASN][1000 genomes]
rs2388026	0.91[AMR][1000 genomes]
rs35516971	0.88[AMR][1000 genomes]
rs4098823	0.86[AMR][1000 genomes]
rs41308623	0.85[AMR][1000 genomes]
rs4343537	0.86[AMR][1000 genomes]
rs6037167	0.85[AMR][1000 genomes]
rs6037179	0.85[AMR][1000 genomes]
rs6037180	0.85[AMR][1000 genomes]
rs6037192	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6037193	0.85[AMR][1000 genomes]
rs6037198	0.91[AMR][1000 genomes]
rs6037199	0.91[AMR][1000 genomes]
rs6037204	0.84[ASN][1000 genomes]
rs6037212	0.87[EUR][1000 genomes]
rs6037220	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6037223	0.86[AMR][1000 genomes]
rs6050725	0.85[AMR][1000 genomes]
rs6050726	0.85[AMR][1000 genomes]
rs6050727	0.85[AMR][1000 genomes]
rs6050729	0.85[AMR][1000 genomes]
rs6050730	0.85[AMR][1000 genomes]
rs6050732	0.85[AMR][1000 genomes]
rs6050733	0.85[AMR][1000 genomes]
rs6050737	0.85[AMR][1000 genomes]
rs6050743	0.85[AMR][1000 genomes]
rs6050745	0.85[AMR][1000 genomes]
rs6050749	0.85[AMR][1000 genomes]
rs6050753	0.85[AMR][1000 genomes]
rs6050754	0.85[AMR][1000 genomes]
rs6050758	0.85[AMR][1000 genomes]
rs6050768	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6050788	0.85[AMR][1000 genomes]
rs6050795	0.91[AMR][1000 genomes]
rs6050804	0.91[AMR][1000 genomes]
rs6050809	0.91[AMR][1000 genomes]
rs6050813	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6050815	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6050816	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050832	0.83[EUR][1000 genomes]
rs6050834	0.86[AMR][1000 genomes]
rs6050835	0.87[EUR][1000 genomes]
rs6050853	0.86[AMR][1000 genomes]
rs7346687	0.83[AMR][1000 genomes]
rs73597829	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8121013	0.85[AMR][1000 genomes]
rs8122589	0.81[EUR][1000 genomes]
rs8126236	0.85[AMR][1000 genomes]
rs981441	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv525033	chr20:25688001-25730968	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
2	chr20:25687800-25695800	Weak transcription	Gastric	stomach
3	chr20:25692600-25693000	ZNF genes & repeats	Primary T cells from cord blood	blood

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