Variant report

Variant	rs6050726
Chromosome Location	chr20:25607642-25607643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:25606913-25607949	PANC-1	pancreas:	n/a	n/a
2	CEBPB	chr20:25607513-25607701	A549	lung:	n/a	n/a
3	POLR2A	chr20:25607188-25607791	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr20:25607045-25607742	MCF10A-Er-Src	breast:	n/a	n/a
5	CEBPB	chr20:25607421-25607702	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr20:25605887-25607858	K562	blood:	n/a	n/a
7	CEBPB	chr20:25607566-25607697	HepG2	liver:	n/a	n/a
8	POLR2A	chr20:25603845-25607875	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr20:25607217-25607707	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr20:25605729-25607717	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr20:25601566..25607773-chr20:25608657..25615631,12	MCF-7	breast:
2	chr20:25571499..25573188-chr20:25604906..25607655,2	K562	blood:
3	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:

Variant related genes	Relation type
NANP	TF binding region
ENSG00000213742	Chromatin interaction
ENSG00000130684	Chromatin interaction

Extended variants
information (count: 284 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:280)

rs_ID	r²[population]
rs1047171	1.00[JPT][hapmap]
rs10485776	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1122769	1.00[JPT][hapmap]
rs11699203	1.00[JPT][hapmap]
rs12106001	0.85[AMR][1000 genomes]
rs12106173	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12428	1.00[JPT][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16987767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs16987786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987789	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987820	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16988014	1.00[JPT][hapmap]
rs1883528	1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1891771	0.90[EUR][1000 genomes]
rs1936188	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1936190	0.90[EUR][1000 genomes]
rs2006249	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2103661	0.85[JPT][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[JPT][hapmap]
rs2387977	0.82[JPT][hapmap]
rs2388026	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs242130	0.94[ASN][1000 genomes]
rs242133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2424719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2482918	1.00[JPT][hapmap]
rs2856	1.00[JPT][hapmap]
rs2892408	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35516971	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35666277	0.85[EUR][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3764695	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3813916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs397119	1.00[JPT][hapmap]
rs398036	1.00[JPT][hapmap]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs409401	0.82[EUR][1000 genomes]
rs4098823	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4098824	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4113658	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4113659	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4113661	0.81[ASN][1000 genomes]
rs4113662	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41308623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417110	1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs428278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs431579	1.00[JPT][hapmap]
rs4318454	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs433352	1.00[JPT][hapmap]
rs4343537	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4368405	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs437635	1.00[JPT][hapmap]
rs442834	1.00[JPT][hapmap]
rs446649	1.00[JPT][hapmap]
rs447808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs449370	1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4574179	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4813579	0.81[ASN][1000 genomes]
rs4815436	1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4815445	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4815450	0.81[ASN][1000 genomes]
rs57638633	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58169034	0.82[EUR][1000 genomes]
rs58184048	0.85[EUR][1000 genomes]
rs58877578	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59399848	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037128	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037131	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037133	1.00[JPT][hapmap]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037168	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037169	0.84[ASN][1000 genomes]
rs6037179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037180	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6037193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037195	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037198	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037204	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037205	0.82[ASN][1000 genomes]
rs6037206	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037208	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037212	0.94[ASN][1000 genomes]
rs6037217	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037220	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60394570	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs60463280	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050611	1.00[JPT][hapmap]
rs6050626	1.00[JPT][hapmap]
rs6050663	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050692	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050707	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050709	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050714	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050720	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050723	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050743	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050745	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050749	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050754	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050755	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050756	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050763	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050765	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050768	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050775	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050779	1.00[JPT][hapmap]
rs6050787	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050791	1.00[JPT][hapmap]
rs6050793	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050795	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050796	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6050799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050801	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050802	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050804	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050805	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050807	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050809	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050815	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6050825	0.81[ASN][1000 genomes]
rs6050832	0.94[ASN][1000 genomes]
rs6050833	0.81[ASN][1000 genomes]
rs6050834	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050835	0.94[ASN][1000 genomes]
rs6050838	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050840	0.81[ASN][1000 genomes]
rs6050841	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050846	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050847	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050848	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050851	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050853	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050854	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050858	1.00[JPT][hapmap]
rs6050867	1.00[JPT][hapmap]
rs6076372	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083862	0.86[JPT][hapmap]
rs6083886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083896	1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083897	0.86[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083899	1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083902	0.83[AFR][1000 genomes]
rs60897995	0.95[EUR][1000 genomes]
rs61052177	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115191	1.00[JPT][hapmap]
rs6115200	1.00[JPT][hapmap]
rs6115214	1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115220	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6115224	1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6115232	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6132848	1.00[JPT][hapmap]
rs6132850	1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6138572	1.00[JPT][hapmap]
rs6138575	1.00[JPT][hapmap]
rs6138588	1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138608	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6138612	1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6138613	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61494938	0.95[EUR][1000 genomes]
rs66467007	0.90[EUR][1000 genomes]
rs66673357	0.85[EUR][1000 genomes]
rs66813885	0.90[EUR][1000 genomes]
rs66927803	0.90[EUR][1000 genomes]
rs66940055	0.90[EUR][1000 genomes]
rs66983770	0.90[EUR][1000 genomes]
rs67679582	0.88[EUR][1000 genomes]
rs67680401	0.90[EUR][1000 genomes]
rs68149491	0.90[EUR][1000 genomes]
rs7260843	0.85[EUR][1000 genomes]
rs7261537	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7261902	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7266130	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7266592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7269064	0.83[EUR][1000 genomes]
rs7270835	1.00[JPT][hapmap]
rs7274550	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337339	0.90[EUR][1000 genomes]
rs73337343	0.90[EUR][1000 genomes]
rs73337346	0.90[EUR][1000 genomes]
rs73337349	0.90[EUR][1000 genomes]
rs73337355	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337356	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337364	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337366	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337369	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337372	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337394	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337401	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339323	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339335	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339360	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73339379	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73339383	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73339387	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341305	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341314	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341328	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341361	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341363	0.91[ASN][1000 genomes]
rs73341365	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73341397	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73343217	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73343255	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73343275	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73343292	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73345232	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345249	0.95[EUR][1000 genomes]
rs73345259	0.82[EUR][1000 genomes]
rs73345264	0.93[EUR][1000 genomes]
rs73345278	0.90[EUR][1000 genomes]
rs73345286	0.90[EUR][1000 genomes]
rs7346687	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73597829	0.97[AMR][1000 genomes]
rs742435	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs761025	1.00[JPT][hapmap]
rs8115484	0.90[EUR][1000 genomes]
rs8115742	1.00[JPT][hapmap]
rs8116267	1.00[JPT][hapmap]
rs8116474	0.84[EUR][1000 genomes]
rs8117181	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8117253	0.90[EUR][1000 genomes]
rs8120065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120972	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8121013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121648	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs8122516	0.84[EUR][1000 genomes]
rs8125002	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8126111	0.90[EUR][1000 genomes]
rs8126236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs84816	1.00[JPT][hapmap]
rs926486	1.00[JPT][hapmap]
rs926487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs928121	1.00[JPT][hapmap]
rs9753575	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs981440	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs981441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9941769	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6050726	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs6050726	ZNF337	cis	Adipose Subcutaneous	GTEx
rs6050726	ZNF337	cis	lung	GTEx
rs6050726	RP4-694B14.5	cis	Thyroid	GTEx
rs6050726	ZNF337	cis	Thyroid	GTEx
rs6050726	RP4-694B14.5	cis	lung	GTEx

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25605400-25616800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:25605400-25628600	Weak transcription	Left Ventricle	heart
3	chr20:25605400-25630400	Weak transcription	Aorta	Aorta
4	chr20:25605600-25608400	Weak transcription	Right Atrium	heart
5	chr20:25605600-25610000	Weak transcription	HSMMtube	muscle
6	chr20:25605600-25610200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr20:25605600-25610200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr20:25605600-25613000	Weak transcription	NHEK	skin
9	chr20:25605600-25615000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:25605600-25615000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr20:25605600-25615000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr20:25605600-25615200	Weak transcription	Adipose Nuclei	Adipose
13	chr20:25605600-25615200	Weak transcription	Brain Anterior Caudate	brain
14	chr20:25605600-25616000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr20:25605600-25616400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr20:25605600-25616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr20:25605600-25616400	Weak transcription	Thymus	Thymus
18	chr20:25605600-25616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:25605600-25616600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr20:25605600-25616800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr20:25605600-25616800	Weak transcription	Primary T cells from cord blood	blood
22	chr20:25605600-25616800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr20:25605600-25618000	Weak transcription	NH-A	brain
24	chr20:25605600-25619200	Weak transcription	Liver	Liver
25	chr20:25605600-25627000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr20:25605600-25628400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr20:25605600-25628600	Weak transcription	Colon Smooth Muscle	Colon
28	chr20:25605600-25630200	Weak transcription	Fetal Intestine Large	intestine
29	chr20:25605600-25635000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr20:25605600-25654600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr20:25605800-25616800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr20:25606000-25612800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr20:25606000-25613200	Weak transcription	Hela-S3	cervix
34	chr20:25606200-25616600	Weak transcription	Fetal Muscle Leg	muscle
35	chr20:25606200-25617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr20:25606200-25626400	Weak transcription	A549	lung
37	chr20:25606400-25607800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr20:25606600-25607800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr20:25606600-25615000	Weak transcription	Dnd41	blood
40	chr20:25607200-25607800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr20:25607200-25607800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr20:25607200-25615200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr20:25607400-25615400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr20:25607400-25616600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr20:25607400-25617000	Weak transcription	K562	blood
46	chr20:25607600-25607800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr20:25607600-25617000	Weak transcription	H1 Cell Line	embryonic stem cell

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Variant report

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