Variant report

Variant	rs6050712
Chromosome Location	chr20:25597236-25597237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:25594825..25598206-chr20:25602674..25604770,4	MCF-7	breast:
2	chr20:25591410..25597359-chr20:25600309..25606040,12	K562	blood:
3	chr20:25591083..25593178-chr20:25596594..25598770,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213742	Chromatin interaction
ENSG00000251883	Chromatin interaction
ENSG00000170191	Chromatin interaction

Extended variants
information (count: 303 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:299)

rs_ID	r²[population]
rs1047171	1.00[JPT][hapmap]
rs10485776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1122769	1.00[JPT][hapmap]
rs11699203	1.00[JPT][hapmap]
rs12106173	1.00[JPT][hapmap]
rs12428	1.00[JPT][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16987767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs16987786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs16987789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs16987799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs16987820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs16987934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16988014	1.00[JPT][hapmap]
rs1883528	1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1891771	0.85[EUR][1000 genomes]
rs1936188	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1936190	0.85[EUR][1000 genomes]
rs2006249	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2103661	0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2387977	0.82[JPT][hapmap]
rs2388026	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs242130	0.94[ASN][1000 genomes]
rs242133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2424719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2482918	1.00[JPT][hapmap]
rs2500406	1.00[JPT][hapmap]
rs2500436	1.00[JPT][hapmap]
rs2856	1.00[JPT][hapmap]
rs2892408	0.96[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35516971	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35666277	0.90[EUR][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3764695	0.94[ASN][1000 genomes]
rs3813916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs397119	1.00[JPT][hapmap]
rs398036	1.00[JPT][hapmap]
rs400070	0.84[EUR][1000 genomes]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[EUR][1000 genomes]
rs409322	0.82[EUR][1000 genomes]
rs409401	0.86[EUR][1000 genomes]
rs4098823	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4098824	0.94[ASN][1000 genomes]
rs4113658	0.94[ASN][1000 genomes]
rs4113659	0.94[ASN][1000 genomes]
rs4113661	0.81[ASN][1000 genomes]
rs4113662	0.94[ASN][1000 genomes]
rs41308623	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417110	1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[EUR][1000 genomes]
rs428278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs431579	1.00[JPT][hapmap]
rs4318454	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs433352	1.00[JPT][hapmap]
rs4343537	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4368405	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs437635	1.00[JPT][hapmap]
rs440612	0.84[EUR][1000 genomes]
rs442834	1.00[JPT][hapmap]
rs446649	1.00[JPT][hapmap]
rs447808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs449370	1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4574179	0.94[ASN][1000 genomes]
rs4813570	0.84[EUR][1000 genomes]
rs4813579	0.81[ASN][1000 genomes]
rs4815436	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4815445	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4815450	0.81[ASN][1000 genomes]
rs57638633	0.94[ASN][1000 genomes]
rs58184048	0.90[EUR][1000 genomes]
rs58877578	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59324912	0.84[EUR][1000 genomes]
rs59399848	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59546510	0.84[EUR][1000 genomes]
rs6037128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037133	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037168	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037169	0.84[ASN][1000 genomes]
rs6037179	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037180	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037192	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6037193	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037195	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs6037196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037198	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037204	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037205	0.82[ASN][1000 genomes]
rs6037206	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037208	0.94[ASN][1000 genomes]
rs6037212	0.94[ASN][1000 genomes]
rs6037217	0.94[ASN][1000 genomes]
rs6037220	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60394570	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs60463280	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050597	0.90[EUR][1000 genomes]
rs6050598	1.00[JPT][hapmap]
rs6050599	1.00[JPT][hapmap]
rs6050611	1.00[JPT][hapmap]
rs6050626	1.00[JPT][hapmap]
rs6050651	0.84[EUR][1000 genomes]
rs6050658	0.84[EUR][1000 genomes]
rs6050663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6050692	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050707	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050709	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050714	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050727	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050729	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050730	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050737	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050743	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050745	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050749	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050753	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050754	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050755	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050756	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050758	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050763	0.88[ASN][1000 genomes]
rs6050765	0.94[ASN][1000 genomes]
rs6050767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050768	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050775	0.94[ASN][1000 genomes]
rs6050779	1.00[JPT][hapmap]
rs6050787	0.94[ASN][1000 genomes]
rs6050788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6050791	1.00[JPT][hapmap]
rs6050793	0.85[ASN][1000 genomes]
rs6050795	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050796	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6050799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6050801	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050802	0.94[ASN][1000 genomes]
rs6050804	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050805	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050807	0.97[ASN][1000 genomes]
rs6050809	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050815	0.89[AMR][1000 genomes]
rs6050825	0.81[ASN][1000 genomes]
rs6050832	0.94[ASN][1000 genomes]
rs6050833	0.81[ASN][1000 genomes]
rs6050834	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050835	0.94[ASN][1000 genomes]
rs6050838	0.94[ASN][1000 genomes]
rs6050840	0.81[ASN][1000 genomes]
rs6050841	0.94[ASN][1000 genomes]
rs6050846	0.94[ASN][1000 genomes]
rs6050847	0.94[ASN][1000 genomes]
rs6050848	0.94[ASN][1000 genomes]
rs6050851	0.94[ASN][1000 genomes]
rs6050853	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050854	0.94[ASN][1000 genomes]
rs6050858	1.00[JPT][hapmap]
rs6050867	1.00[JPT][hapmap]
rs6076372	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083853	1.00[JPT][hapmap]
rs6083862	0.86[JPT][hapmap]
rs6083886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083896	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083897	0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083899	1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083902	0.87[AFR][1000 genomes]
rs60897995	0.90[EUR][1000 genomes]
rs61052177	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115191	1.00[JPT][hapmap]
rs6115200	1.00[JPT][hapmap]
rs6115214	1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115220	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6115224	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6115232	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6132848	1.00[JPT][hapmap]
rs6132850	1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6138572	1.00[JPT][hapmap]
rs6138575	1.00[JPT][hapmap]
rs6138588	1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138608	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6138612	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6138613	0.96[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61494938	0.90[EUR][1000 genomes]
rs66467007	0.95[EUR][1000 genomes]
rs66591653	0.84[EUR][1000 genomes]
rs66673357	0.90[EUR][1000 genomes]
rs66813885	0.85[EUR][1000 genomes]
rs66927803	0.95[EUR][1000 genomes]
rs66940055	0.95[EUR][1000 genomes]
rs66983770	0.85[EUR][1000 genomes]
rs67359112	0.84[EUR][1000 genomes]
rs67455519	0.84[EUR][1000 genomes]
rs67482703	0.84[EUR][1000 genomes]
rs67679582	0.92[EUR][1000 genomes]
rs67680401	0.95[EUR][1000 genomes]
rs67921634	0.84[EUR][1000 genomes]
rs68149491	0.95[EUR][1000 genomes]
rs68165049	0.84[EUR][1000 genomes]
rs7260843	0.90[EUR][1000 genomes]
rs7261537	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7261902	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7266130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7266592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7270835	1.00[JPT][hapmap]
rs7274550	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73333512	0.85[EUR][1000 genomes]
rs73333513	0.90[EUR][1000 genomes]
rs73337339	0.95[EUR][1000 genomes]
rs73337343	0.95[EUR][1000 genomes]
rs73337346	0.95[EUR][1000 genomes]
rs73337349	0.95[EUR][1000 genomes]
rs73337355	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337356	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337364	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337366	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337369	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337372	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337394	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337401	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339323	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339335	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339360	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73339379	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73339383	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73339387	0.97[ASN][1000 genomes]
rs73341305	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341314	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341328	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341361	0.94[ASN][1000 genomes]
rs73341363	0.91[ASN][1000 genomes]
rs73341365	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73341397	0.94[ASN][1000 genomes]
rs73343217	0.94[ASN][1000 genomes]
rs73343255	0.94[ASN][1000 genomes]
rs73343275	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73343292	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73345232	0.94[ASN][1000 genomes]
rs73345249	0.90[EUR][1000 genomes]
rs73345264	0.88[EUR][1000 genomes]
rs73345278	0.85[EUR][1000 genomes]
rs73345286	0.85[EUR][1000 genomes]
rs7346687	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73597810	0.84[EUR][1000 genomes]
rs73597812	0.84[EUR][1000 genomes]
rs73597813	0.84[EUR][1000 genomes]
rs73597829	0.91[AMR][1000 genomes]
rs742435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs742436	0.84[EUR][1000 genomes]
rs761025	1.00[JPT][hapmap]
rs8115484	0.95[EUR][1000 genomes]
rs8115742	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs8116267	1.00[JPT][hapmap]
rs8117181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs8117253	0.95[EUR][1000 genomes]
rs8120065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120972	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8121013	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121648	1.00[JPT][hapmap]
rs8125002	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8126111	0.95[EUR][1000 genomes]
rs8126236	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs84816	1.00[JPT][hapmap]
rs926486	1.00[JPT][hapmap]
rs926487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs928121	1.00[JPT][hapmap]
rs9753575	0.94[ASN][1000 genomes]
rs981440	0.94[ASN][1000 genomes]
rs981441	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6050712	ZNF337	cis	Thyroid	GTEx
rs6050712	RP4-694B14.5	cis	lung	GTEx
rs6050712	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs6050712	RP4-694B14.5	cis	Thyroid	GTEx
rs6050712	ZNF337	cis	Adipose Subcutaneous	GTEx
rs6050712	ZNF337	cis	lung	GTEx

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25580200-25603000	Weak transcription	Fetal Brain Male	brain
2	chr20:25581800-25603800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:25582000-25602800	Weak transcription	Osteobl	bone
4	chr20:25586000-25602600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr20:25586200-25602800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr20:25587000-25603000	Weak transcription	HSMMtube	muscle
7	chr20:25587400-25600400	Weak transcription	K562	blood
8	chr20:25587600-25601400	Weak transcription	Pancreas	Pancrea
9	chr20:25588400-25597800	Strong transcription	Dnd41	blood
10	chr20:25588400-25599200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr20:25588600-25599400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr20:25588600-25599400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr20:25588600-25602800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr20:25589200-25601000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr20:25589200-25602600	Weak transcription	Right Ventricle	heart
16	chr20:25590800-25602600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr20:25590800-25603200	Weak transcription	Fetal Intestine Large	intestine
18	chr20:25591000-25603600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr20:25591400-25602800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr20:25591600-25600200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr20:25591600-25602800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr20:25591600-25603000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr20:25591600-25603200	Weak transcription	Fetal Lung	lung
24	chr20:25592200-25602600	Weak transcription	Colon Smooth Muscle	Colon
25	chr20:25592200-25602600	Weak transcription	NHLF	lung
26	chr20:25592200-25602800	Weak transcription	Small Intestine	intestine
27	chr20:25592200-25602800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr20:25592200-25603200	Weak transcription	Brain Germinal Matrix	brain
29	chr20:25592600-25597600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr20:25592600-25602800	Weak transcription	Esophagus	oesophagus
31	chr20:25592600-25603200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr20:25592800-25603200	Weak transcription	Fetal Kidney	kidney
33	chr20:25592800-25603200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr20:25593000-25597400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr20:25593000-25597600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr20:25593000-25602800	Weak transcription	NH-A	brain
37	chr20:25593200-25600400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr20:25593600-25602800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr20:25593800-25597600	Strong transcription	Fetal Thymus	thymus
40	chr20:25593800-25603000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr20:25594000-25602800	Weak transcription	Spleen	Spleen
42	chr20:25594000-25603200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr20:25594200-25600400	Weak transcription	Primary B cells from cord blood	blood
44	chr20:25594200-25602800	Weak transcription	Brain Angular Gyrus	brain
45	chr20:25594200-25602800	Weak transcription	Psoas Muscle	Psoas
46	chr20:25594200-25603200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr20:25594200-25603200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr20:25594200-25603200	Weak transcription	Fetal Intestine Small	intestine
49	chr20:25594200-25603200	Weak transcription	Ovary	ovary
50	chr20:25594200-25603400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

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