Variant report

Variant	rs2424719
Chromosome Location	chr20:25474612-25474613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:25474404-25474715	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr20:25474583-25475331	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25474550..25476302-chr20:25479455..25481151,2	K562	blood:
2	chr20:25445981..25448619-chr20:25473407..25476003,2	K562	blood:

Variant related genes	Relation type
NINL	TF binding region

Extended variants
information (count: 280 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:260)

rs_ID	r²[population]
rs1047171	1.00[JPT][hapmap]
rs10485776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11100	1.00[JPT][hapmap]
rs1130694	1.00[JPT][hapmap]
rs11699203	1.00[JPT][hapmap]
rs12428	1.00[JPT][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987767	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs16987786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16987789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16987799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16987820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16987934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1883528	1.00[JPT][hapmap]
rs1888997	1.00[JPT][hapmap]
rs1888999	1.00[JPT][hapmap]
rs2103661	0.85[JPT][hapmap]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2258719	1.00[JPT][hapmap]
rs2258728	1.00[JPT][hapmap]
rs2258769	1.00[JPT][hapmap]
rs2259837	1.00[JPT][hapmap]
rs2297496	1.00[JPT][hapmap]
rs2297497	1.00[JPT][hapmap]
rs2387881	1.00[JPT][hapmap]
rs2387977	0.82[JPT][hapmap]
rs2388026	0.87[EUR][1000 genomes]
rs242133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs2482911	1.00[JPT][hapmap]
rs2482918	1.00[JPT][hapmap]
rs2482923	1.00[JPT][hapmap]
rs2482927	1.00[JPT][hapmap]
rs2482931	1.00[JPT][hapmap]
rs2482943	1.00[JPT][hapmap]
rs2500399	1.00[JPT][hapmap]
rs2500405	1.00[JPT][hapmap]
rs2500406	1.00[JPT][hapmap]
rs2500424	1.00[JPT][hapmap]
rs2500432	1.00[JPT][hapmap]
rs2500433	1.00[JPT][hapmap]
rs2500436	1.00[JPT][hapmap]
rs2500446	1.00[JPT][hapmap]
rs2856	1.00[JPT][hapmap]
rs35666277	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3761117	1.00[JPT][hapmap]
rs3764695	0.87[EUR][1000 genomes]
rs3813916	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs397119	1.00[JPT][hapmap]
rs398036	1.00[JPT][hapmap]
rs400070	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs409322	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs409401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs417110	1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431579	1.00[JPT][hapmap]
rs433352	1.00[JPT][hapmap]
rs437635	1.00[JPT][hapmap]
rs440612	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs442834	1.00[JPT][hapmap]
rs446649	1.00[JPT][hapmap]
rs447808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs449370	1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4813562	1.00[JPT][hapmap]
rs4813570	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4815411	1.00[JPT][hapmap]
rs4815412	1.00[JPT][hapmap]
rs4815417	1.00[JPT][hapmap]
rs4815436	1.00[JPT][hapmap]
rs57638633	0.87[EUR][1000 genomes]
rs58184048	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58877578	0.82[EUR][1000 genomes]
rs59324912	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59546510	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037095	1.00[JPT][hapmap]
rs6037097	1.00[JPT][hapmap]
rs6037103	1.00[JPT][hapmap]
rs6037105	1.00[JPT][hapmap]
rs6037128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6037161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6037164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6037166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6037167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6037179	0.87[EUR][1000 genomes]
rs6037180	0.87[EUR][1000 genomes]
rs6037193	0.83[EUR][1000 genomes]
rs6037195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs6037196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037198	0.87[EUR][1000 genomes]
rs6037199	0.87[EUR][1000 genomes]
rs6037208	0.87[EUR][1000 genomes]
rs6050532	1.00[JPT][hapmap]
rs6050544	0.86[JPT][hapmap]
rs6050559	1.00[JPT][hapmap]
rs6050561	1.00[JPT][hapmap]
rs6050565	1.00[JPT][hapmap]
rs6050567	1.00[JPT][hapmap]
rs6050573	1.00[JPT][hapmap]
rs6050590	1.00[JPT][hapmap]
rs6050594	0.82[EUR][1000 genomes]
rs6050597	0.82[EUR][1000 genomes]
rs6050598	1.00[JPT][hapmap]
rs6050599	1.00[JPT][hapmap]
rs6050611	1.00[JPT][hapmap]
rs6050626	1.00[JPT][hapmap]
rs6050651	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050658	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050692	0.86[EUR][1000 genomes]
rs6050709	0.84[EUR][1000 genomes]
rs6050710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6050712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6050714	0.86[EUR][1000 genomes]
rs6050717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6050723	0.82[EUR][1000 genomes]
rs6050724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6050725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6050726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6050727	0.82[EUR][1000 genomes]
rs6050729	0.82[EUR][1000 genomes]
rs6050730	0.82[EUR][1000 genomes]
rs6050732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050758	0.87[EUR][1000 genomes]
rs6050763	0.87[EUR][1000 genomes]
rs6050765	0.87[EUR][1000 genomes]
rs6050767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050768	0.82[EUR][1000 genomes]
rs6050770	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050775	0.87[EUR][1000 genomes]
rs6050779	1.00[JPT][hapmap]
rs6050787	0.87[EUR][1000 genomes]
rs6050788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6050789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6050791	1.00[JPT][hapmap]
rs6050793	0.87[EUR][1000 genomes]
rs6050795	0.87[EUR][1000 genomes]
rs6050799	0.87[EUR][1000 genomes]
rs6050802	0.87[EUR][1000 genomes]
rs6050804	0.87[EUR][1000 genomes]
rs6050807	0.87[EUR][1000 genomes]
rs6050809	0.87[EUR][1000 genomes]
rs6050815	0.87[EUR][1000 genomes]
rs6076336	1.00[JPT][hapmap]
rs6083804	1.00[JPT][hapmap]
rs6083805	1.00[JPT][hapmap]
rs6083809	1.00[JPT][hapmap]
rs6083818	1.00[JPT][hapmap]
rs6083828	1.00[JPT][hapmap]
rs6083853	1.00[JPT][hapmap]
rs6083862	0.86[JPT][hapmap]
rs6083886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs6083896	1.00[JPT][hapmap]
rs6083897	0.86[JPT][hapmap]
rs6083899	1.00[JPT][hapmap]
rs6107031	1.00[JPT][hapmap]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115140	1.00[JPT][hapmap]
rs6115159	1.00[JPT][hapmap]
rs6115191	1.00[JPT][hapmap]
rs6115200	1.00[JPT][hapmap]
rs6115214	1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115224	1.00[JPT][hapmap]
rs6115232	1.00[JPT][hapmap]
rs6132848	1.00[JPT][hapmap]
rs6132850	1.00[JPT][hapmap]
rs6138572	1.00[JPT][hapmap]
rs6138575	1.00[JPT][hapmap]
rs6138588	1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138612	1.00[JPT][hapmap]
rs66467007	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66501707	0.82[EUR][1000 genomes]
rs66591653	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66673357	0.82[EUR][1000 genomes]
rs66927803	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66940055	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67069812	0.82[EUR][1000 genomes]
rs67359112	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67455519	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67482703	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67679582	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67680401	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67921634	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68149491	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68165049	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7020	1.00[JPT][hapmap]
rs7260843	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7261537	0.82[EUR][1000 genomes]
rs7261902	0.82[EUR][1000 genomes]
rs7262450	0.82[EUR][1000 genomes]
rs7266130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7266592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7267979	1.00[JPT][hapmap]
rs7270835	1.00[JPT][hapmap]
rs7273525	0.82[EUR][1000 genomes]
rs7274550	0.86[EUR][1000 genomes]
rs73331863	0.82[EUR][1000 genomes]
rs73331878	0.82[EUR][1000 genomes]
rs73333513	0.82[EUR][1000 genomes]
rs73337339	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73337343	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73337346	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73337349	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73337355	0.86[EUR][1000 genomes]
rs73337356	0.86[EUR][1000 genomes]
rs73337364	0.86[EUR][1000 genomes]
rs73337366	0.86[EUR][1000 genomes]
rs73337369	0.86[EUR][1000 genomes]
rs73337372	0.86[EUR][1000 genomes]
rs73337394	0.84[EUR][1000 genomes]
rs73339323	0.84[EUR][1000 genomes]
rs73339335	0.84[EUR][1000 genomes]
rs73339360	0.82[EUR][1000 genomes]
rs73339379	0.84[EUR][1000 genomes]
rs73341361	0.87[EUR][1000 genomes]
rs73341397	0.83[EUR][1000 genomes]
rs73343217	0.87[EUR][1000 genomes]
rs73343255	0.87[EUR][1000 genomes]
rs73597810	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73597811	0.91[ASN][1000 genomes]
rs73597812	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73597813	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73614590	0.82[EUR][1000 genomes]
rs73614591	0.82[EUR][1000 genomes]
rs73614594	0.82[EUR][1000 genomes]
rs742435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs742436	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs761025	1.00[JPT][hapmap]
rs8115484	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8115742	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8117181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8117253	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8120065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs8120594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs8120972	0.86[EUR][1000 genomes]
rs8126111	0.86[EUR][1000 genomes]
rs84816	1.00[JPT][hapmap]
rs926486	1.00[JPT][hapmap]
rs926487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs928121	1.00[JPT][hapmap]
rs981440	0.87[EUR][1000 genomes]
rs981441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9927	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv482647	chr20:25308912-25481982	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1056997	chr20:25316663-25492339	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv912828	chr20:25433015-25595175	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1062452	chr20:25438025-25590278	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv1066066	chr20:25439367-25588016	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv544224	chr20:25439367-25588016	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv912829	chr20:25444242-25595175	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv912830	chr20:25449945-25595175	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv912831	chr20:25449945-25595868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv994976	chr20:25466406-25593286	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	nsv534623	chr20:25466406-25593296	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv1062765	chr20:25466482-25556751	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv544225	chr20:25466482-25556751	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs2424719	ZNF337	cis	Thyroid	GTEx
rs2424719	RP4-694B14.5	cis	Whole Blood	GTEx
rs2424719	ZNF337	cis	Adipose Subcutaneous	GTEx
rs2424719	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs2424719	ZNF337	cis	Stomach	GTEx
rs2424719	RP4-694B14.5	cis	Thyroid	GTEx
rs2424719	NINL	cis	Nerve Tibial	GTEx
rs2424719	RP4-694B14.5	cis	lung	GTEx
rs2424719	ZNF337	cis	Whole Blood	GTEx
rs2424719	RP4-694B14.5	cis	Stomach	GTEx
rs2424719	ZNF337	cis	lung	GTEx

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25427200-25488200	Weak transcription	Stomach Mucosa	stomach
2	chr20:25430200-25484400	Strong transcription	Fetal Stomach	stomach
3	chr20:25431800-25484200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr20:25446000-25489600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr20:25446400-25488200	Weak transcription	Right Atrium	heart
6	chr20:25447000-25477600	Strong transcription	Fetal Muscle Leg	muscle
7	chr20:25448200-25490600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr20:25448600-25484200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr20:25448800-25480800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr20:25451400-25488800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr20:25453400-25494400	Strong transcription	Brain Germinal Matrix	brain
12	chr20:25457800-25489000	Weak transcription	Placenta	Placenta
13	chr20:25459800-25489800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr20:25462800-25474800	Weak transcription	Right Ventricle	heart
15	chr20:25462800-25488200	Weak transcription	Colonic Mucosa	Colon
16	chr20:25465000-25483000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr20:25465400-25481600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr20:25465600-25490000	Weak transcription	Brain Angular Gyrus	brain
19	chr20:25465800-25488000	Weak transcription	Fetal Kidney	kidney
20	chr20:25466000-25484200	Weak transcription	Fetal Brain Male	brain
21	chr20:25466200-25477400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr20:25467400-25484200	Weak transcription	Left Ventricle	heart
23	chr20:25467400-25491800	Weak transcription	Primary T cells from cord blood	blood
24	chr20:25467600-25488000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr20:25467800-25476400	Strong transcription	A549	lung
26	chr20:25468600-25484200	Weak transcription	HUVEC	blood vessel
27	chr20:25469000-25477400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr20:25469800-25477400	Weak transcription	HSMMtube	muscle
29	chr20:25469800-25484200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr20:25470000-25475800	Weak transcription	Brain Substantia Nigra	brain
31	chr20:25470000-25477400	Weak transcription	Colon Smooth Muscle	Colon
32	chr20:25470000-25483000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr20:25470000-25488000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr20:25470000-25488000	Weak transcription	Osteobl	bone
35	chr20:25470200-25475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr20:25470200-25484200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr20:25470600-25477400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr20:25470600-25484200	Weak transcription	NHLF	lung
39	chr20:25470800-25480800	Weak transcription	Fetal Lung	lung
40	chr20:25470800-25484200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr20:25470800-25484400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr20:25471000-25475800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr20:25471000-25488200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr20:25471400-25482400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr20:25471400-25483000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr20:25471600-25475000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr20:25471800-25476000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr20:25472000-25475000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr20:25472000-25483600	Weak transcription	Lung	lung
50	chr20:25472000-25484200	Weak transcription	Adipose Nuclei	Adipose

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