Variant report

Variant rs59546510
Chromosome Location chr20:25517987-25517988
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25495800-25519400 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr20:25498200-25519000 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr20:25498200-25519400 Weak transcription Gastric stomach
4 chr20:25498200-25532200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr20:25498400-25519200 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr20:25502600-25519800 Weak transcription Stomach Mucosa stomach
7 chr20:25505400-25521000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr20:25507400-25518400 Weak transcription A549 lung
9 chr20:25507600-25518000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr20:25507600-25519600 Weak transcription Fetal Intestine Large intestine
11 chr20:25511200-25520200 Weak transcription Fetal Brain Male brain
12 chr20:25513400-25519200 Enhancers Liver Liver
13 chr20:25513600-25518200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr20:25513600-25518600 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr20:25513600-25519400 Weak transcription Esophagus oesophagus
16 chr20:25513800-25520400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr20:25513800-25521200 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr20:25514200-25521000 Weak transcription H9 Cell Line embryonic stem cell
19 chr20:25514400-25520000 Weak transcription NHLF lung
20 chr20:25514400-25520800 Weak transcription Fetal Kidney kidney
21 chr20:25514400-25522400 Weak transcription NH-A brain
22 chr20:25514800-25518200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr20:25514800-25519200 Weak transcription Right Atrium heart
24 chr20:25514800-25520000 Weak transcription Osteobl bone
25 chr20:25514800-25520400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr20:25515000-25519000 Weak transcription Stomach Smooth Muscle stomach
27 chr20:25515000-25519600 Weak transcription H1 Cell Line embryonic stem cell
28 chr20:25515000-25520200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr20:25515000-25520200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr20:25515200-25518000 Weak transcription Fetal Intestine Small intestine
31 chr20:25515200-25518600 Weak transcription Right Ventricle heart
32 chr20:25515200-25519200 Weak transcription Pancreas Pancrea
33 chr20:25515400-25518200 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr20:25515400-25519200 Weak transcription Colon Smooth Muscle Colon
35 chr20:25515400-25519600 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr20:25515400-25520600 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr20:25515600-25519600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr20:25515600-25519800 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr20:25515600-25520200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr20:25515800-25518400 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr20:25515800-25519200 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr20:25515800-25519400 Weak transcription Brain Cingulate Gyrus brain
43 chr20:25515800-25519400 Weak transcription Fetal Heart heart
44 chr20:25515800-25519800 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr20:25516000-25518200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr20:25516000-25518200 Weak transcription Brain Germinal Matrix brain
47 chr20:25516000-25519800 Weak transcription Fetal Thymus thymus
48 chr20:25516000-25520200 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr20:25516200-25519800 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr20:25516600-25518000 Enhancers Fetal Muscle Trunk muscle

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