Variant report

Variant	rs742435
Chromosome Location	chr20:25489692-25489693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:25476255..25479902-chr20:25487059..25491596,6	MCF-7	breast:
2	chr20:25487824..25490513-chr20:25503941..25506270,3	MCF-7	breast:
3	chr20:25487968..25491385-chr20:25492316..25494168,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101004	Chromatin interaction

Extended variants
information (count: 290 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:273)

rs_ID	r²[population]
rs1047171	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs10485776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11699203	1.00[JPT][hapmap]
rs12428	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987767	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs16987786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987799	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16987820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16987934	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs1883528	1.00[JPT][hapmap]
rs1888997	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1888999	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2103661	0.85[JPT][hapmap]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297496	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2297497	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2387881	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2387977	0.82[JPT][hapmap]
rs2388026	0.89[EUR][1000 genomes]
rs242130	0.81[CHD][hapmap]
rs242133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2424719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2482911	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2482918	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2482923	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2482927	1.00[JPT][hapmap]
rs2482931	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2482943	1.00[JPT][hapmap]
rs2500399	1.00[JPT][hapmap]
rs2500405	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2500406	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs2500424	1.00[JPT][hapmap]
rs2500432	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2500433	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2500436	1.00[JPT][hapmap]
rs2500446	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2856	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs35666277	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3761117	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs3764695	0.89[EUR][1000 genomes]
rs3813916	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs397119	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs398036	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs400070	1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs409322	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs409401	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4098823	0.89[EUR][1000 genomes]
rs4098824	0.89[EUR][1000 genomes]
rs4113658	0.89[EUR][1000 genomes]
rs4113659	0.89[EUR][1000 genomes]
rs4113662	0.89[EUR][1000 genomes]
rs417110	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs428278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs431579	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs433352	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4343537	0.89[EUR][1000 genomes]
rs437635	1.00[JPT][hapmap]
rs440612	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs442834	1.00[JPT][hapmap]
rs446649	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs447808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs449370	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4574179	0.89[EUR][1000 genomes]
rs4813562	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4813570	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815411	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4815412	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4815417	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4815436	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4815445	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs57638633	0.89[EUR][1000 genomes]
rs58184048	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58877578	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59324912	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59546510	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037095	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6037097	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6037103	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6037105	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6037128	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037131	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037133	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037164	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs6037166	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs6037167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037179	0.89[EUR][1000 genomes]
rs6037180	0.89[EUR][1000 genomes]
rs6037192	0.82[EUR][1000 genomes]
rs6037193	0.85[EUR][1000 genomes]
rs6037195	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs6037196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037198	0.89[EUR][1000 genomes]
rs6037199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs6037205	0.80[EUR][1000 genomes]
rs6037208	0.89[EUR][1000 genomes]
rs6037217	0.89[EUR][1000 genomes]
rs6037220	0.81[EUR][1000 genomes]
rs6050532	1.00[JPT][hapmap]
rs6050544	0.86[JPT][hapmap]
rs6050559	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050561	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050565	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050567	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050573	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050590	1.00[JPT][hapmap]
rs6050594	0.84[EUR][1000 genomes]
rs6050597	0.84[EUR][1000 genomes]
rs6050598	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs6050599	1.00[JPT][hapmap]
rs6050611	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050626	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs6050651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050658	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050692	0.84[EUR][1000 genomes]
rs6050709	0.82[EUR][1000 genomes]
rs6050710	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs6050712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6050714	0.84[EUR][1000 genomes]
rs6050717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6050724	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs6050725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050726	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050732	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs6050733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050758	0.89[EUR][1000 genomes]
rs6050763	0.89[EUR][1000 genomes]
rs6050765	0.89[EUR][1000 genomes]
rs6050767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs6050768	0.84[EUR][1000 genomes]
rs6050770	0.80[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap]
rs6050775	0.89[EUR][1000 genomes]
rs6050779	1.00[JPT][hapmap]
rs6050787	0.89[EUR][1000 genomes]
rs6050788	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs6050789	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs6050791	1.00[JPT][hapmap]
rs6050793	0.89[EUR][1000 genomes]
rs6050795	0.89[EUR][1000 genomes]
rs6050796	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs6050799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs6050802	0.89[EUR][1000 genomes]
rs6050804	0.89[EUR][1000 genomes]
rs6050807	0.89[EUR][1000 genomes]
rs6050809	0.89[EUR][1000 genomes]
rs6050815	0.89[EUR][1000 genomes]
rs6050832	0.84[EUR][1000 genomes]
rs6050834	0.89[EUR][1000 genomes]
rs6050838	0.89[EUR][1000 genomes]
rs6050841	0.89[EUR][1000 genomes]
rs6050846	0.89[EUR][1000 genomes]
rs6050847	0.89[EUR][1000 genomes]
rs6050848	0.89[EUR][1000 genomes]
rs6050851	0.89[EUR][1000 genomes]
rs6076336	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6083804	1.00[JPT][hapmap]
rs6083805	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6083809	1.00[JPT][hapmap]
rs6083818	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6083828	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6083853	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6083862	0.86[JPT][hapmap]
rs6083886	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs6083896	1.00[JPT][hapmap]
rs6083897	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6083899	1.00[JPT][hapmap]
rs6107031	1.00[JPT][hapmap]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115159	1.00[JPT][hapmap]
rs6115191	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6115200	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6115214	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115224	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs6115232	1.00[JPT][hapmap]
rs6132848	1.00[JPT][hapmap]
rs6132850	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6138572	1.00[JPT][hapmap]
rs6138575	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6138588	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138612	1.00[JPT][hapmap]
rs66467007	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66501707	0.84[EUR][1000 genomes]
rs66591653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66673357	0.84[EUR][1000 genomes]
rs66927803	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66940055	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67069812	0.84[EUR][1000 genomes]
rs67359112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67455519	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67482703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67679582	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67680401	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67921634	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68149491	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68165049	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7260843	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7261537	0.84[EUR][1000 genomes]
rs7261902	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7262450	0.84[EUR][1000 genomes]
rs7266130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7266592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7267979	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs7270835	1.00[JPT][hapmap]
rs7273525	0.84[EUR][1000 genomes]
rs7274550	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73331863	0.84[EUR][1000 genomes]
rs73331878	0.84[EUR][1000 genomes]
rs73333513	0.84[EUR][1000 genomes]
rs73337339	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337343	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337346	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337349	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337355	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337356	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337364	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337366	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337369	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337372	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337394	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337401	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73339323	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73339335	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73339360	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73339379	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73339383	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73339387	0.84[AMR][1000 genomes]
rs73341361	0.89[EUR][1000 genomes]
rs73341397	0.85[EUR][1000 genomes]
rs73343217	0.89[EUR][1000 genomes]
rs73343255	0.89[EUR][1000 genomes]
rs73345232	0.89[EUR][1000 genomes]
rs73597810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73597811	1.00[ASN][1000 genomes]
rs73597812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597813	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614590	0.84[EUR][1000 genomes]
rs73614591	0.84[EUR][1000 genomes]
rs73614594	0.84[EUR][1000 genomes]
rs742436	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761025	1.00[JPT][hapmap]
rs8115484	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8115742	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8117181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8117253	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8120594	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs8120972	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8126111	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs84816	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs926486	1.00[JPT][hapmap]
rs926487	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs928121	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs981440	0.89[EUR][1000 genomes]
rs981441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1056997	chr20:25316663-25492339	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv912828	chr20:25433015-25595175	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1062452	chr20:25438025-25590278	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1066066	chr20:25439367-25588016	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv544224	chr20:25439367-25588016	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv912829	chr20:25444242-25595175	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv912830	chr20:25449945-25595175	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv912831	chr20:25449945-25595868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv994976	chr20:25466406-25593286	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv534623	chr20:25466406-25593296	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv1062765	chr20:25466482-25556751	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv544225	chr20:25466482-25556751	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs742435	NINL	cis	Nerve Tibial	GTEx
rs742435	ZNF337	cis	Adipose Subcutaneous	GTEx
rs742435	RP4-694B14.5	cis	lung	GTEx
rs742435	ZNF337	cis	lymphoblastoid	seeQTL
rs742435	RP4-694B14.5	cis	Whole Blood	GTEx
rs742435	RP4-694B14.5	cis	Thyroid	GTEx
rs742435	RP4-694B14.5	cis	Stomach	GTEx
rs742435	GINS1	cis	lymphoblastoid	seeQTL
rs742435	ZNF337	cis	Whole Blood	GTEx
rs742435	ZNF337	cis	lung	GTEx
rs742435	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs742435	ZNF337	cis	Stomach	GTEx
rs742435	ZNF337	cis	Thyroid	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25448200-25490600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr20:25453400-25494400	Strong transcription	Brain Germinal Matrix	brain
3	chr20:25459800-25489800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr20:25465600-25490000	Weak transcription	Brain Angular Gyrus	brain
5	chr20:25467400-25491800	Weak transcription	Primary T cells from cord blood	blood
6	chr20:25473400-25494400	Strong transcription	Fetal Brain Female	brain
7	chr20:25473600-25494600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr20:25473600-25494600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr20:25473800-25494200	Strong transcription	Thymus	Thymus
10	chr20:25474400-25495200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:25474600-25494800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr20:25474800-25493400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr20:25475400-25494000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:25475400-25498000	Weak transcription	Right Ventricle	heart
15	chr20:25477000-25494800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr20:25477400-25495200	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr20:25478200-25494800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr20:25478400-25490000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr20:25478800-25490400	Weak transcription	Fetal Thymus	thymus
20	chr20:25478800-25494600	Strong transcription	Fetal Muscle Leg	muscle
21	chr20:25480400-25494600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr20:25480800-25494600	Strong transcription	Fetal Lung	lung
23	chr20:25481200-25494000	Strong transcription	Dnd41	blood
24	chr20:25481400-25494800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr20:25482600-25494600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr20:25483000-25494400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr20:25483000-25494800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr20:25483400-25494600	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr20:25485000-25490600	Weak transcription	Left Ventricle	heart
30	chr20:25485800-25494800	Strong transcription	Fetal Stomach	stomach
31	chr20:25485800-25498600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr20:25487200-25491600	Strong transcription	Fetal Brain Male	brain
33	chr20:25487200-25495000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr20:25487200-25498200	Strong transcription	Stomach Smooth Muscle	stomach
35	chr20:25487600-25491600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr20:25487800-25491600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr20:25488000-25489800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr20:25488000-25490200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr20:25488000-25491200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr20:25488000-25492000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
41	chr20:25488000-25492200	Strong transcription	Fetal Kidney	kidney
42	chr20:25488000-25494200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr20:25488000-25495200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr20:25488200-25489800	Enhancers	Hela-S3	cervix
45	chr20:25488200-25490000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
46	chr20:25488200-25490000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr20:25488200-25490000	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr20:25488200-25496800	Weak transcription	Fetal Heart	heart
49	chr20:25488400-25489800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr20:25489000-25489800	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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