Variant report

Variant	rs6083897
Chromosome Location	chr20:25585911-25585912
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25581299..25586315-chr20:25601577..25606333,5	MCF-7	breast:
2	chr20:25585705..25588241-chr20:25603917..25606437,2	K562	blood:

Variant related genes	Relation type
ENSG00000170191	Chromatin interaction
ENSG00000213742	Chromatin interaction

Extended variants
information (count: 252 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:236)

rs_ID	r²[population]
rs1047171	0.86[JPT][hapmap]
rs10485776	0.86[JPT][hapmap]
rs11087521	0.86[JPT][hapmap]
rs1109100	0.86[JPT][hapmap]
rs1122769	0.86[JPT][hapmap]
rs11699203	0.84[JPT][hapmap]
rs12106173	1.00[CHD][hapmap];0.86[JPT][hapmap]
rs12428	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs1569617	0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987767	0.89[CHD][hapmap]
rs16987786	0.86[JPT][hapmap]
rs16987789	0.86[JPT][hapmap]
rs16987799	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs16987820	0.86[JPT][hapmap]
rs16987934	1.00[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs16988014	0.84[JPT][hapmap]
rs1883528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2006249	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2103661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151144	0.86[JPT][hapmap]
rs2179458	0.86[JPT][hapmap]
rs2388026	0.85[ASN][1000 genomes]
rs242130	0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs242133	0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2424719	0.86[JPT][hapmap]
rs2482911	0.86[JPT][hapmap]
rs2482918	0.86[JPT][hapmap]
rs2500406	0.86[JPT][hapmap]
rs2500424	0.86[JPT][hapmap]
rs2500436	0.86[JPT][hapmap]
rs2856	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs2892408	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35516971	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs372678	0.86[JPT][hapmap]
rs3761117	0.86[JPT][hapmap]
rs3764695	0.85[ASN][1000 genomes]
rs3813916	1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs397119	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs398036	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs402120	0.94[ASW][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];0.93[YRI][hapmap]
rs4098823	0.85[ASN][1000 genomes]
rs4098824	0.85[ASN][1000 genomes]
rs4113658	0.85[ASN][1000 genomes]
rs4113659	0.85[ASN][1000 genomes]
rs4113662	0.85[ASN][1000 genomes]
rs41308623	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs417110	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs417130	0.86[JPT][hapmap]
rs422844	0.86[JPT][hapmap]
rs424487	0.86[JPT][hapmap]
rs426563	0.86[JPT][hapmap];0.93[YRI][hapmap]
rs428278	0.86[JPT][hapmap];0.89[YRI][hapmap]
rs431579	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs4318454	0.82[ASN][1000 genomes]
rs433352	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs4343537	0.85[ASN][1000 genomes]
rs4368405	0.82[ASN][1000 genomes]
rs437635	0.86[JPT][hapmap]
rs442834	0.86[JPT][hapmap]
rs446649	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs447808	0.86[JPT][hapmap]
rs449370	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs449703	0.86[JPT][hapmap]
rs454723	0.86[JPT][hapmap]
rs4574179	0.85[ASN][1000 genomes]
rs4815436	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4815445	1.00[CHD][hapmap];0.86[JPT][hapmap]
rs57638633	0.85[ASN][1000 genomes]
rs58877578	0.88[ASN][1000 genomes]
rs59399848	0.82[ASN][1000 genomes]
rs6037128	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6037131	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6037133	0.86[JPT][hapmap]
rs6037159	0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6037161	0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6037164	0.94[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6037166	0.94[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6037167	0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6037168	0.91[ASN][1000 genomes]
rs6037179	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6037180	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6037192	0.87[AFR][1000 genomes]
rs6037193	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6037196	0.86[JPT][hapmap]
rs6037198	0.85[ASN][1000 genomes]
rs6037199	1.00[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.90[MKK][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs6037206	0.82[ASN][1000 genomes]
rs6037208	0.85[ASN][1000 genomes]
rs6037212	0.85[ASN][1000 genomes]
rs6037217	0.85[ASN][1000 genomes]
rs6037220	0.85[ASN][1000 genomes]
rs6037223	0.86[JPT][hapmap];0.83[YRI][hapmap]
rs60394570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60463280	0.82[ASN][1000 genomes]
rs6050598	0.86[JPT][hapmap]
rs6050599	0.86[JPT][hapmap]
rs6050611	0.86[JPT][hapmap]
rs6050626	0.86[JPT][hapmap]
rs6050663	0.86[JPT][hapmap]
rs6050692	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050707	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050709	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050710	0.94[ASW][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050712	0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050714	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050717	0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050720	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050723	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050724	0.94[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050725	0.86[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050726	0.86[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050727	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050729	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050730	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050732	0.93[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050733	0.86[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050737	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6050743	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6050745	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050749	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050753	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050754	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050755	0.85[ASN][1000 genomes]
rs6050756	0.85[ASN][1000 genomes]
rs6050758	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050763	0.80[ASN][1000 genomes]
rs6050765	0.85[ASN][1000 genomes]
rs6050767	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6050768	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050770	1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6050775	0.85[ASN][1000 genomes]
rs6050779	0.86[JPT][hapmap]
rs6050787	0.85[ASN][1000 genomes]
rs6050788	0.94[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050789	0.85[ASN][1000 genomes]
rs6050791	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6050795	0.85[ASN][1000 genomes]
rs6050796	0.90[CHD][hapmap];0.86[JPT][hapmap]
rs6050799	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6050801	0.82[ASN][1000 genomes]
rs6050802	0.85[ASN][1000 genomes]
rs6050804	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6050805	0.82[ASN][1000 genomes]
rs6050807	0.88[ASN][1000 genomes]
rs6050809	0.85[ASN][1000 genomes]
rs6050832	0.85[ASN][1000 genomes]
rs6050834	0.85[ASN][1000 genomes]
rs6050835	0.85[ASN][1000 genomes]
rs6050838	0.85[ASN][1000 genomes]
rs6050841	0.85[ASN][1000 genomes]
rs6050846	0.85[ASN][1000 genomes]
rs6050847	0.85[ASN][1000 genomes]
rs6050848	0.85[ASN][1000 genomes]
rs6050851	0.85[ASN][1000 genomes]
rs6050853	0.85[ASN][1000 genomes]
rs6050854	0.85[ASN][1000 genomes]
rs6050858	0.86[JPT][hapmap]
rs6050867	0.90[CHD][hapmap];0.86[JPT][hapmap]
rs6076372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083853	0.86[JPT][hapmap]
rs6083886	0.86[JPT][hapmap];0.82[LWK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083902	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61052177	0.82[ASN][1000 genomes]
rs6107045	0.86[JPT][hapmap]
rs6107047	0.86[JPT][hapmap]
rs6115191	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6115200	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6115214	1.00[CHD][hapmap];0.86[JPT][hapmap]
rs6115215	0.86[JPT][hapmap]
rs6115220	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6115224	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115232	0.86[JPT][hapmap]
rs6132848	0.86[JPT][hapmap]
rs6132850	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6138572	0.86[JPT][hapmap]
rs6138575	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6138588	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6138600	0.86[JPT][hapmap]
rs6138608	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138613	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7261537	0.88[ASN][1000 genomes]
rs7261902	0.88[ASN][1000 genomes]
rs7266130	0.86[JPT][hapmap]
rs7266592	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7270835	0.86[JPT][hapmap]
rs7274550	0.88[ASN][1000 genomes]
rs73337355	0.88[ASN][1000 genomes]
rs73337356	0.88[ASN][1000 genomes]
rs73337364	0.88[ASN][1000 genomes]
rs73337366	0.88[ASN][1000 genomes]
rs73337369	0.88[ASN][1000 genomes]
rs73337372	0.88[ASN][1000 genomes]
rs73337394	0.88[ASN][1000 genomes]
rs73337401	0.88[ASN][1000 genomes]
rs73339323	0.88[ASN][1000 genomes]
rs73339335	0.88[ASN][1000 genomes]
rs73339360	0.94[ASN][1000 genomes]
rs73339379	0.88[ASN][1000 genomes]
rs73339383	0.88[ASN][1000 genomes]
rs73339387	0.88[ASN][1000 genomes]
rs73341305	0.88[ASN][1000 genomes]
rs73341314	0.88[ASN][1000 genomes]
rs73341328	0.88[ASN][1000 genomes]
rs73341361	0.85[ASN][1000 genomes]
rs73341363	0.82[ASN][1000 genomes]
rs73341365	0.82[ASN][1000 genomes]
rs73341397	0.85[ASN][1000 genomes]
rs73343217	0.85[ASN][1000 genomes]
rs73343255	0.85[ASN][1000 genomes]
rs73343275	0.82[ASN][1000 genomes]
rs73343292	0.82[ASN][1000 genomes]
rs73345232	0.85[ASN][1000 genomes]
rs7346687	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs742435	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs761025	0.86[JPT][hapmap]
rs8115742	0.82[JPT][hapmap]
rs8116267	0.84[JPT][hapmap]
rs8117181	0.86[JPT][hapmap]
rs8120065	0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8120594	0.94[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8120972	0.88[ASN][1000 genomes]
rs8121013	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8121648	0.86[JPT][hapmap]
rs8125002	0.88[ASN][1000 genomes]
rs8126111	0.82[ASN][1000 genomes]
rs8126236	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs84816	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs926486	0.86[JPT][hapmap]
rs926487	0.87[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[MKK][hapmap];0.85[ASN][1000 genomes]
rs928121	1.00[CHD][hapmap];0.86[JPT][hapmap]
rs9753575	0.85[ASN][1000 genomes]
rs981440	0.85[ASN][1000 genomes]
rs981441	0.94[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv912828	chr20:25433015-25595175	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1062452	chr20:25438025-25590278	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1066066	chr20:25439367-25588016	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv544224	chr20:25439367-25588016	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv912829	chr20:25444242-25595175	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv912830	chr20:25449945-25595175	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv912831	chr20:25449945-25595868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv994976	chr20:25466406-25593286	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv534623	chr20:25466406-25593296	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv912832	chr20:25527984-25595175	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
16	nsv912833	chr20:25539486-25595175	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6083897	C20orf22	cis	multi-tissue	Pritchard
rs6083897	HDHD4	cis	multi-tissue	Pritchard
rs6083897	PYGB	cis	multi-tissue	Pritchard

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25573800-25590400	Weak transcription	Thymus	Thymus
2	chr20:25580200-25603000	Weak transcription	Fetal Brain Male	brain
3	chr20:25581600-25594000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr20:25581800-25594000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:25581800-25603800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:25582000-25593200	Weak transcription	Adipose Nuclei	Adipose
7	chr20:25582000-25594800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr20:25582000-25602800	Weak transcription	Osteobl	bone
9	chr20:25582200-25593000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr20:25583600-25594200	Weak transcription	Aorta	Aorta
11	chr20:25584000-25588400	Weak transcription	Dnd41	blood
12	chr20:25584400-25593800	Weak transcription	Liver	Liver
13	chr20:25584800-25588000	Weak transcription	HepG2	liver
14	chr20:25585200-25587000	Enhancers	HSMMtube	muscle
15	chr20:25585400-25586400	Enhancers	Fetal Muscle Leg	muscle
16	chr20:25585600-25595200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr20:25585800-25586000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr20:25585800-25586200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr20:25585800-25586200	Enhancers	Fetal Stomach	stomach

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