Variant report

Variant	rs6037192
Chromosome Location	chr20:25665271-25665272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25603625..25606406-chr20:25665177..25670447,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213742	Chromatin interaction
ENSG00000170191	Chromatin interaction

Extended variants
information (count: 182 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs10485776	0.82[EUR][1000 genomes]
rs1076690	0.90[ASN][1000 genomes]
rs1109100	0.82[EUR][1000 genomes]
rs1122769	0.86[EUR][1000 genomes]
rs12106001	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12106173	0.89[EUR][1000 genomes]
rs1569617	0.90[AFR][1000 genomes]
rs16987786	0.82[EUR][1000 genomes]
rs16987799	0.82[EUR][1000 genomes]
rs16987820	0.82[EUR][1000 genomes]
rs16988014	0.86[EUR][1000 genomes]
rs1883528	0.90[AFR][1000 genomes]
rs2006249	0.85[AFR][1000 genomes]
rs2103661	0.90[AFR][1000 genomes]
rs2179458	0.82[EUR][1000 genomes]
rs2388026	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242133	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2892408	0.91[AFR][1000 genomes]
rs35516971	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3764695	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3813916	0.84[ASN][1000 genomes]
rs400070	0.82[EUR][1000 genomes]
rs4098823	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4098824	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4113658	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4113659	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4113662	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41308623	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4318454	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4343537	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4368405	0.84[ASN][1000 genomes]
rs440612	0.82[EUR][1000 genomes]
rs4574179	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4813570	0.82[EUR][1000 genomes]
rs4815436	0.90[AFR][1000 genomes]
rs57638633	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58169034	0.89[EUR][1000 genomes]
rs59324912	0.82[EUR][1000 genomes]
rs59399848	0.84[ASN][1000 genomes]
rs59546510	0.82[EUR][1000 genomes]
rs6037128	0.82[EUR][1000 genomes]
rs6037131	0.82[EUR][1000 genomes]
rs6037133	0.82[EUR][1000 genomes]
rs6037159	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6037161	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6037164	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6037166	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6037167	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6037168	0.81[ASN][1000 genomes]
rs6037179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037195	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6037196	0.80[ASN][1000 genomes]
rs6037198	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037199	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037204	0.81[ASN][1000 genomes]
rs6037205	0.84[EUR][1000 genomes]
rs6037206	0.84[ASN][1000 genomes]
rs6037208	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037212	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037217	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037220	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037223	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60394570	0.90[AFR][1000 genomes]
rs60463280	0.84[ASN][1000 genomes]
rs6050651	0.82[EUR][1000 genomes]
rs6050658	0.82[EUR][1000 genomes]
rs6050663	0.82[EUR][1000 genomes]
rs6050692	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6050707	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050709	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050710	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050712	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050714	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050717	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050720	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050723	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050724	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050725	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050726	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050727	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050732	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050733	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050737	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6050743	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050745	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050753	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6050754	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6050755	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6050756	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6050758	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050763	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050765	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050767	0.84[ASN][1000 genomes]
rs6050768	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050770	0.84[ASN][1000 genomes]
rs6050775	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050787	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050788	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050789	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050793	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6050795	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050799	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050801	0.84[ASN][1000 genomes]
rs6050802	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050804	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050805	0.84[ASN][1000 genomes]
rs6050807	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050809	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050813	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050815	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6050816	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6050825	0.80[ASN][1000 genomes]
rs6050832	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050834	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050835	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050838	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050841	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050846	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050847	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050848	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050851	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050853	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050854	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6076372	0.90[AFR][1000 genomes]
rs6083896	0.90[AFR][1000 genomes]
rs6083897	0.87[AFR][1000 genomes]
rs6083899	0.90[AFR][1000 genomes]
rs6083902	0.82[AFR][1000 genomes]
rs61052177	0.84[ASN][1000 genomes]
rs6115220	0.91[AFR][1000 genomes]
rs6115224	0.90[AFR][1000 genomes]
rs6132850	0.87[AFR][1000 genomes]
rs6138608	0.90[AFR][1000 genomes]
rs6138612	0.90[AFR][1000 genomes]
rs6138613	0.90[AFR][1000 genomes]
rs66591653	0.82[EUR][1000 genomes]
rs67359112	0.82[EUR][1000 genomes]
rs67455519	0.82[EUR][1000 genomes]
rs67482703	0.82[EUR][1000 genomes]
rs67921634	0.82[EUR][1000 genomes]
rs7266130	0.82[EUR][1000 genomes]
rs73341361	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73341363	0.84[ASN][1000 genomes]
rs73341365	0.84[ASN][1000 genomes]
rs73341397	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73343217	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73343255	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73343275	0.84[ASN][1000 genomes]
rs73343292	0.84[ASN][1000 genomes]
rs73345232	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73345259	0.89[EUR][1000 genomes]
rs73345280	0.86[EUR][1000 genomes]
rs7346687	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73597810	0.82[EUR][1000 genomes]
rs73597812	0.82[EUR][1000 genomes]
rs73597813	0.82[EUR][1000 genomes]
rs73597829	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs742435	0.82[EUR][1000 genomes]
rs742436	0.82[EUR][1000 genomes]
rs8115742	0.82[EUR][1000 genomes]
rs8116267	0.86[EUR][1000 genomes]
rs8116474	0.91[EUR][1000 genomes]
rs8117181	0.82[EUR][1000 genomes]
rs8120065	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8120594	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8121013	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8121648	0.89[EUR][1000 genomes]
rs8122516	0.91[EUR][1000 genomes]
rs8122589	0.86[EUR][1000 genomes]
rs8126236	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs926487	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9753575	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs981440	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs981441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9941769	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6037192	ZNF337	cis	lung	GTEx
rs6037192	RP4-694B14.5	cis	lung	GTEx
rs6037192	ZNF337	cis	Stomach	GTEx
rs6037192	RP4-694B14.5	cis	Stomach	GTEx
rs6037192	ZNF337	cis	Thyroid	GTEx
rs6037192	ZNF337	cis	Adipose Subcutaneous	GTEx
rs6037192	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25656600-25667200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr20:25657200-25666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:25657200-25667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr20:25657200-25674200	Weak transcription	Fetal Heart	heart
5	chr20:25657400-25666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:25657400-25666000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr20:25657400-25666000	Weak transcription	Psoas Muscle	Psoas
8	chr20:25657400-25666600	Weak transcription	Pancreas	Pancrea
9	chr20:25657400-25676200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr20:25657600-25665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr20:25657600-25665800	Weak transcription	Right Ventricle	heart
12	chr20:25657600-25665800	Weak transcription	Spleen	Spleen
13	chr20:25657600-25666000	Weak transcription	Brain Substantia Nigra	brain
14	chr20:25657600-25666000	Weak transcription	Esophagus	oesophagus
15	chr20:25657600-25666000	Weak transcription	Gastric	stomach
16	chr20:25657600-25666000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr20:25657600-25666600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:25657600-25667200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr20:25657600-25672200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr20:25657600-25672600	Weak transcription	Fetal Brain Male	brain
21	chr20:25657600-25676000	Weak transcription	Stomach Mucosa	stomach
22	chr20:25657600-25676200	Weak transcription	Hela-S3	cervix
23	chr20:25657600-25676200	Weak transcription	K562	blood
24	chr20:25657600-25676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr20:25657800-25667000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr20:25657800-25667200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr20:25657800-25676000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr20:25657800-25676200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr20:25657800-25676200	Weak transcription	Colonic Mucosa	Colon
30	chr20:25657800-25676200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr20:25658000-25667200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr20:25658200-25676200	Weak transcription	Fetal Kidney	kidney
33	chr20:25658400-25676200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr20:25658600-25665800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr20:25658600-25666000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr20:25658800-25676200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr20:25659000-25676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr20:25659600-25666000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr20:25659600-25666000	Weak transcription	Aorta	Aorta
40	chr20:25659600-25666000	Weak transcription	Fetal Intestine Small	intestine
41	chr20:25659600-25667600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr20:25660600-25676000	Weak transcription	HUVEC	blood vessel
43	chr20:25661000-25666000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr20:25662000-25665800	Weak transcription	Brain Anterior Caudate	brain
45	chr20:25662000-25666000	Weak transcription	Brain Angular Gyrus	brain
46	chr20:25662200-25665800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr20:25662200-25665800	Weak transcription	Placenta	Placenta
48	chr20:25662200-25666000	Weak transcription	Lung	lung
49	chr20:25662200-25666000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr20:25662200-25672000	Weak transcription	NH-A	brain

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