Variant report

Variant	rs6050801
Chromosome Location	chr20:25681516-25681517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 205 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:199)

rs_ID	r²[population]
rs1076690	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1122769	0.84[EUR][1000 genomes]
rs12106173	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1569617	0.88[ASN][1000 genomes]
rs16987934	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16988014	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1891771	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1936188	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1936190	0.95[EUR][1000 genomes]
rs2103661	0.82[ASN][1000 genomes]
rs2388026	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs242130	0.85[ASN][1000 genomes]
rs242133	0.85[ASN][1000 genomes]
rs35516971	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3764695	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3813916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4098823	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4098824	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4113658	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4113659	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4113661	0.84[ASN][1000 genomes]
rs4113662	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41308623	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4318454	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343537	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4368405	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574179	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4813579	0.84[ASN][1000 genomes]
rs4815445	0.84[ASN][1000 genomes]
rs4815450	0.84[ASN][1000 genomes]
rs57638633	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58169034	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58877578	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59399848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037159	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037161	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037164	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037166	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037167	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037168	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037179	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037180	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037192	0.84[ASN][1000 genomes]
rs6037193	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037195	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6037196	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6037198	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037199	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037204	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6037205	0.85[ASN][1000 genomes]
rs6037206	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037208	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037212	0.97[ASN][1000 genomes]
rs6037217	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037220	0.97[ASN][1000 genomes]
rs6037222	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037223	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60463280	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050692	0.90[EUR][1000 genomes]
rs6050707	0.91[ASN][1000 genomes]
rs6050709	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050710	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050712	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050714	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050717	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050720	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050723	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050724	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050725	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050726	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050727	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050729	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050730	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050732	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050733	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050737	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050743	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050745	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050749	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050753	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050754	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050755	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050756	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050757	0.81[ASN][1000 genomes]
rs6050758	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050763	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050765	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050767	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050768	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050770	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050775	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050779	0.81[ASN][1000 genomes]
rs6050787	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050788	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050789	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050793	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6050795	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050796	0.84[ASN][1000 genomes]
rs6050799	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050802	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050804	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050805	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050807	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050809	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050815	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050816	0.81[ASN][1000 genomes]
rs6050825	0.84[ASN][1000 genomes]
rs6050832	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050833	0.84[ASN][1000 genomes]
rs6050834	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050835	0.97[ASN][1000 genomes]
rs6050838	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050840	0.84[ASN][1000 genomes]
rs6050841	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050846	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050847	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050848	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050851	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050853	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050854	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6076372	0.82[ASN][1000 genomes]
rs6083886	0.87[EUR][1000 genomes]
rs6083896	0.82[ASN][1000 genomes]
rs6083897	0.82[ASN][1000 genomes]
rs6083899	0.82[ASN][1000 genomes]
rs60897995	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61052177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115224	0.82[ASN][1000 genomes]
rs6138612	0.82[ASN][1000 genomes]
rs61494938	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66467007	0.90[EUR][1000 genomes]
rs66813885	0.95[EUR][1000 genomes]
rs66927803	0.90[EUR][1000 genomes]
rs66940055	0.90[EUR][1000 genomes]
rs66983770	0.95[EUR][1000 genomes]
rs67680401	0.90[EUR][1000 genomes]
rs68149491	0.90[EUR][1000 genomes]
rs7261537	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7261902	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7266592	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7269064	0.87[EUR][1000 genomes]
rs7274550	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337339	0.90[EUR][1000 genomes]
rs73337343	0.90[EUR][1000 genomes]
rs73337346	0.90[EUR][1000 genomes]
rs73337349	0.90[EUR][1000 genomes]
rs73337355	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337356	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337364	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337366	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337369	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337372	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337394	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337401	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73339323	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73339335	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73339360	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73339379	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73339383	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73339387	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341305	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341314	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341328	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341361	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341363	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341365	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341397	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73343217	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73343255	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73343275	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73343292	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73345232	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73345249	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73345259	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73345264	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73345278	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73345280	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73345286	0.95[EUR][1000 genomes]
rs7346687	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8115484	0.90[EUR][1000 genomes]
rs8116267	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8116474	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8117253	0.90[EUR][1000 genomes]
rs8120065	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8120594	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8120972	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8121013	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8121648	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8122516	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8122589	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8125002	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8126111	0.90[EUR][1000 genomes]
rs8126236	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs926486	0.81[ASN][1000 genomes]
rs926487	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9753575	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs981440	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs981441	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9941769	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3486652	chr20:25678552-25682550	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3486654	chr20:25679002-25682400	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3486655	chr20:25679002-25682400	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs6050801	ZNF337	cis	Adipose Subcutaneous	GTEx
rs6050801	ZNF337	cis	Stomach	GTEx
rs6050801	ZNF337	cis	Thyroid	GTEx
rs6050801	RP4-694B14.5	cis	lung	GTEx
rs6050801	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs6050801	ZNF337	cis	lung	GTEx
rs6050801	RP4-694B14.5	cis	Stomach	GTEx
rs6050801	NINL	cis	Nerve Tibial	GTEx
rs6050801	RP4-694B14.5	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
2	chr20:25678000-25681600	Weak transcription	Brain Hippocampus Middle	brain
3	chr20:25678000-25687600	Weak transcription	Esophagus	oesophagus
4	chr20:25681000-25687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:25681400-25687400	Weak transcription	Dnd41	blood

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