Variant report

Variant	rs73339383
Chromosome Location	chr20:25603472-25603473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr20:25603120-25603561	MCF10A-Er-Src	breast:	n/a	n/a
2	GTF2F1	chr20:25603213-25604118	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr20:25603391-25605382	Hela-S3	cervix:	n/a	n/a
4	MAX	chr20:25603355-25605500	HepG2	liver:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
5	HEY1	chr20:25603462-25605531	K562	blood:	n/a	chr20:25604347-25604362
6	MAX	chr20:25602731-25605564	A549	lung:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
7	BHLHE40	chr20:25603286-25605418	K562	blood:	n/a	chr20:25604616-25604632
8	MXI1	chr20:25603212-25605606	IMR90	lung:	n/a	n/a
9	POLR2A	chr20:25603220-25605649	K562	blood:	n/a	n/a
10	TBP	chr20:25603403-25605380	K562	blood:	n/a	n/a
11	SIN3AK20	chr20:25603245-25605615	MCF-7	breast:	n/a	n/a
12	STAT3	chr20:25603013-25603778	MCF10A-Er-Src	breast:	n/a	n/a
13	MBD4	chr20:25603412-25605623	HepG2	liver:	n/a	n/a
14	MAX	chr20:25603460-25605592	HepG2	liver:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
15	MYBL2	chr20:25603264-25605585	HepG2	liver:	n/a	n/a
16	HEY1	chr20:25603355-25605572	HepG2	liver:	n/a	chr20:25604347-25604362
17	TBP	chr20:25603277-25604062	Hela-S3	cervix:	n/a	n/a
18	YY1	chr20:25603334-25603646	SK-N-SH_RA	brain:	n/a	chr20:25603492-25603504
19	POLR2A	chr20:25603454-25605533	K562	blood:	n/a	n/a
20	POLR2A	chr20:25603212-25605528	HepG2	liver:	n/a	n/a
21	MYC	chr20:25602903-25604011	MCF10A-Er-Src	breast:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
22	WRNIP1	chr20:25603216-25603637	GM12878	blood:	n/a	n/a
23	YY1	chr20:25603144-25603683	HepG2	liver:	n/a	chr20:25603492-25603504
24	POLR2A	chr20:25602582-25605593	HepG2	liver:	n/a	n/a
25	POLR2A	chr20:25602700-25603551	HepG2	liver:	n/a	n/a
26	RAD21	chr20:25603346-25605287	IMR90	lung:	n/a	chr20:25604588-25604602 chr20:25604588-25604601 chr20:25604586-25604600
27	BRCA1	chr20:25603416-25605326	Hela-S3	cervix:	n/a	n/a
28	MYC	chr20:25603470-25605446	K562	blood:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
29	TCF12	chr20:25602972-25605622	A549	lung:	n/a	n/a
30	YY1	chr20:25603093-25603644	A549	lung:	n/a	chr20:25603492-25603504
31	KAP1	chr20:25603444-25605414	HEK293	kidney:	n/a	n/a
32	POLR2A	chr20:25602890-25606578	HepG2	liver:	n/a	n/a
33	YY1	chr20:25603321-25603665	H1-hESC	embryonic stem cell:	n/a	chr20:25603492-25603504

No.	Distal block	Cell Line	Cell type
1	chr20:25563758..25567670-chr20:25600746..25606260,10	MCF-7	breast:
2	chr20:25590781..25592605-chr20:25602144..25606440,3	MCF-7	breast:
3	chr20:25564265..25567754-chr20:25602950..25606854,10	MCF-7	breast:
4	chr20:25589660..25591878-chr20:25602645..25604407,2	K562	blood:
5	chr20:25601566..25607773-chr20:25608657..25615631,12	MCF-7	breast:
6	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:
7	chr20:25591410..25597359-chr20:25600309..25606040,12	K562	blood:
8	chr20:25589271..25591160-chr20:25602645..25604605,2	K562	blood:
9	chr20:25602721..25604667-chr6:41038688..41041497,2	MCF-7	breast:
10	chr20:25602965..25606226-chr20:25676160..25678613,3	K562	blood:

Variant related genes	Relation type
ZNF337-AS1	TF binding region
ENSG00000130684	Chromatin interaction
ENSG00000001167	Chromatin interaction
ENSG00000124596	Chromatin interaction
ENSG00000213742	Chromatin interaction
ENSG00000101004	Chromatin interaction
ENSG00000251883	Chromatin interaction

Extended variants
information (count: 238 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:234)

rs_ID	r²[population]
rs10485776	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1076690	0.88[AMR][1000 genomes]
rs1109100	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1122769	0.81[EUR][1000 genomes]
rs12106173	0.84[EUR][1000 genomes]
rs1569617	0.94[ASN][1000 genomes]
rs16987767	0.87[EUR][1000 genomes]
rs16987786	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16987789	0.81[AMR][1000 genomes]
rs16987799	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16987820	0.81[EUR][1000 genomes]
rs16987934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16988014	0.81[EUR][1000 genomes]
rs1883528	0.82[ASN][1000 genomes]
rs1891771	0.92[EUR][1000 genomes]
rs1936188	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1936190	0.92[EUR][1000 genomes]
rs2006249	0.81[ASN][1000 genomes]
rs2103661	0.88[ASN][1000 genomes]
rs2179458	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2388026	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs242130	0.91[ASN][1000 genomes]
rs242133	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2892408	0.82[ASN][1000 genomes]
rs35516971	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35666277	0.87[EUR][1000 genomes]
rs3764695	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3813916	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs400070	0.81[EUR][1000 genomes]
rs4098823	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4098824	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4113658	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4113659	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4113662	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41308623	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4318454	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4343537	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4368405	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs440612	0.81[EUR][1000 genomes]
rs4574179	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4813570	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4815436	0.82[ASN][1000 genomes]
rs57638633	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58169034	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58184048	0.87[EUR][1000 genomes]
rs58877578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59324912	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59399848	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59546510	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6037128	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6037131	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6037133	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6037159	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037161	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037164	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037166	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037167	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037168	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037169	0.81[ASN][1000 genomes]
rs6037179	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037180	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037193	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037195	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037196	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6037198	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037199	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037204	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6037206	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037208	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037212	0.91[ASN][1000 genomes]
rs6037217	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037220	0.91[ASN][1000 genomes]
rs6037222	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6037223	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60394570	0.83[ASN][1000 genomes]
rs60463280	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050651	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6050658	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6050663	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6050692	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050707	0.97[ASN][1000 genomes]
rs6050709	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050710	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050712	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050714	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050717	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050720	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050723	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050724	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050725	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050726	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050727	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050729	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050730	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050732	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050733	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050737	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050743	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050745	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050749	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050753	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050754	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050755	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050756	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050758	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050763	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050765	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050767	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050768	0.91[ASN][1000 genomes]
rs6050770	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050775	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050787	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050788	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050789	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050793	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050795	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050799	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050801	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050802	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050804	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050805	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050807	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050809	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050815	0.84[EUR][1000 genomes]
rs6050832	0.91[ASN][1000 genomes]
rs6050834	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050835	0.91[ASN][1000 genomes]
rs6050838	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050841	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050846	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050847	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050848	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050851	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050853	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050854	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6076372	0.88[ASN][1000 genomes]
rs6083886	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083896	0.88[ASN][1000 genomes]
rs6083897	0.88[ASN][1000 genomes]
rs6083899	0.88[ASN][1000 genomes]
rs60897995	0.97[EUR][1000 genomes]
rs61052177	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6115220	0.82[ASN][1000 genomes]
rs6115224	0.88[ASN][1000 genomes]
rs6115232	0.81[ASN][1000 genomes]
rs6132850	0.82[ASN][1000 genomes]
rs6138612	0.88[ASN][1000 genomes]
rs6138613	0.85[ASN][1000 genomes]
rs61494938	0.97[EUR][1000 genomes]
rs66467007	0.92[EUR][1000 genomes]
rs66591653	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66673357	0.87[EUR][1000 genomes]
rs66813885	0.92[EUR][1000 genomes]
rs66927803	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66940055	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66983770	0.92[EUR][1000 genomes]
rs67359112	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67455519	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67482703	0.81[EUR][1000 genomes]
rs67679582	0.90[EUR][1000 genomes]
rs67680401	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67921634	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68149491	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7260843	0.87[EUR][1000 genomes]
rs7261537	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7261902	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7266130	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7266592	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7269064	0.85[EUR][1000 genomes]
rs7274550	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73333512	0.82[EUR][1000 genomes]
rs73333513	0.87[EUR][1000 genomes]
rs73337339	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73337343	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73337346	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73337349	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73337355	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337356	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337364	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337366	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337369	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337372	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337394	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73337401	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73339323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73339335	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73339360	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73339379	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73339387	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341305	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341314	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341328	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341361	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73341363	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341365	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341397	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73343217	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73343255	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73343275	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73343292	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345232	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73345249	0.97[EUR][1000 genomes]
rs73345259	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73345264	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73345278	0.92[EUR][1000 genomes]
rs73345280	0.81[EUR][1000 genomes]
rs73345286	0.92[EUR][1000 genomes]
rs7346687	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73597810	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73597812	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73597813	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs742435	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs742436	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8115484	0.92[EUR][1000 genomes]
rs8115742	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8116267	0.81[EUR][1000 genomes]
rs8116474	0.86[EUR][1000 genomes]
rs8117181	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8117253	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8120065	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8120594	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8120972	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8121013	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8121648	0.84[EUR][1000 genomes]
rs8122516	0.86[EUR][1000 genomes]
rs8122589	0.81[EUR][1000 genomes]
rs8125002	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8126111	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8126236	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs926487	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9753575	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs981440	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs981441	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9941769	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs73339383	RP4-694B14.5	cis	Thyroid	GTEx
rs73339383	RP4-694B14.5	cis	Stomach	GTEx
rs73339383	ZNF337	cis	Stomach	GTEx
rs73339383	RP4-694B14.5	cis	lung	GTEx
rs73339383	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs73339383	NINL	cis	Nerve Tibial	GTEx
rs73339383	ZNF337	cis	Adipose Subcutaneous	GTEx
rs73339383	ZNF337	cis	lung	GTEx
rs73339383	ZNF337	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25581800-25603800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:25591000-25603600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr20:25600800-25603600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr20:25602600-25603600	Flanking Active TSS	Hela-S3	cervix
5	chr20:25602800-25603600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:25602800-25603600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr20:25602800-25603600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr20:25602800-25603600	Enhancers	Esophagus	oesophagus
9	chr20:25602800-25603600	Enhancers	Gastric	stomach
10	chr20:25602800-25603600	Enhancers	Pancreas	Pancrea
11	chr20:25602800-25603800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
12	chr20:25602800-25603800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr20:25602800-25603800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr20:25602800-25603800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr20:25602800-25603800	Enhancers	Small Intestine	intestine
16	chr20:25602800-25604000	Flanking Active TSS	HMEC	breast
17	chr20:25603000-25603600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:25603000-25603600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr20:25603000-25603600	Flanking Active TSS	NH-A	brain
20	chr20:25603000-25603800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr20:25603000-25603800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr20:25603000-25603800	Flanking Active TSS	Thymus	Thymus
23	chr20:25603000-25603800	Flanking Active TSS	NHEK	skin
24	chr20:25603000-25604200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr20:25603000-25604400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr20:25603000-25605000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr20:25603000-25605200	Active TSS	HSMMtube	muscle
28	chr20:25603000-25605200	Active TSS	NHDF-Ad	bronchial
29	chr20:25603000-25606000	Active TSS	K562	blood
30	chr20:25603200-25603600	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr20:25603200-25603600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr20:25603200-25603600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr20:25603200-25603600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr20:25603200-25603600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr20:25603200-25603600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr20:25603200-25603600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr20:25603200-25603600	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr20:25603200-25603600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr20:25603200-25603600	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr20:25603200-25603600	Active TSS	Fetal Brain Male	brain
41	chr20:25603200-25603600	Flanking Active TSS	Fetal Kidney	kidney
42	chr20:25603200-25603600	Enhancers	Placenta	Placenta
43	chr20:25603200-25603600	Flanking Active TSS	Psoas Muscle	Psoas
44	chr20:25603200-25603600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr20:25603200-25603600	Flanking Active TSS	Rectal Smooth Muscle	rectum
46	chr20:25603200-25603600	Flanking Active TSS	A549	lung
47	chr20:25603200-25603600	Flanking Active TSS	GM12878-XiMat	blood
48	chr20:25603200-25603600	Flanking Active TSS	Osteobl	bone
49	chr20:25603200-25603800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
50	chr20:25603200-25603800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell

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