Variant report

Variant	rs7260843
Chromosome Location	chr20:25430516-25430517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 293 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:273)

rs_ID	r²[population]
rs1047171	1.00[JPT][hapmap]
rs10485776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11100	1.00[JPT][hapmap]
rs1130694	1.00[JPT][hapmap]
rs11699203	1.00[JPT][hapmap]
rs12428	1.00[JPT][hapmap]
rs13038092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16987789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16987799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16987820	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16987934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs1883528	1.00[JPT][hapmap]
rs1888997	1.00[JPT][hapmap]
rs1888999	1.00[JPT][hapmap]
rs2103661	0.85[JPT][hapmap]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2227890	1.00[JPT][hapmap]
rs2227892	1.00[JPT][hapmap]
rs2257233	1.00[JPT][hapmap]
rs2257461	1.00[JPT][hapmap]
rs2257705	1.00[JPT][hapmap]
rs2257712	1.00[JPT][hapmap]
rs2257991	1.00[JPT][hapmap]
rs2258066	1.00[JPT][hapmap]
rs2258135	1.00[JPT][hapmap]
rs2258201	1.00[JPT][hapmap]
rs2258617	1.00[JPT][hapmap]
rs2258719	1.00[JPT][hapmap]
rs2258728	1.00[JPT][hapmap]
rs2258769	1.00[JPT][hapmap]
rs2259837	1.00[JPT][hapmap]
rs2260997	1.00[JPT][hapmap]
rs2261109	1.00[JPT][hapmap]
rs2261747	1.00[JPT][hapmap]
rs2261784	1.00[JPT][hapmap]
rs2297496	1.00[JPT][hapmap]
rs2297497	1.00[JPT][hapmap]
rs2387881	1.00[JPT][hapmap]
rs2387977	0.82[JPT][hapmap]
rs242133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2424698	1.00[JPT][hapmap]
rs2424699	1.00[JPT][hapmap]
rs2424704	1.00[JPT][hapmap]
rs2424719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2474777	1.00[JPT][hapmap]
rs2482911	1.00[JPT][hapmap]
rs2482918	1.00[JPT][hapmap]
rs2482923	1.00[JPT][hapmap]
rs2482927	1.00[JPT][hapmap]
rs2482931	1.00[JPT][hapmap]
rs2482943	1.00[JPT][hapmap]
rs2500399	1.00[JPT][hapmap]
rs2500405	1.00[JPT][hapmap]
rs2500406	1.00[JPT][hapmap]
rs2500424	1.00[JPT][hapmap]
rs2500432	1.00[JPT][hapmap]
rs2500433	1.00[JPT][hapmap]
rs2500436	1.00[JPT][hapmap]
rs2500446	1.00[JPT][hapmap]
rs2856	1.00[JPT][hapmap]
rs35516971	0.80[EUR][1000 genomes]
rs35666277	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3761117	1.00[JPT][hapmap]
rs397119	1.00[JPT][hapmap]
rs398036	1.00[JPT][hapmap]
rs400070	0.84[EUR][1000 genomes]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs409401	0.82[EUR][1000 genomes]
rs41308623	0.83[EUR][1000 genomes]
rs417110	1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs428278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs431579	1.00[JPT][hapmap]
rs433352	1.00[JPT][hapmap]
rs437635	1.00[JPT][hapmap]
rs440612	0.84[EUR][1000 genomes]
rs442834	1.00[JPT][hapmap]
rs446649	1.00[JPT][hapmap]
rs447808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs449370	1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4813562	1.00[JPT][hapmap]
rs4813570	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4815411	1.00[JPT][hapmap]
rs4815412	1.00[JPT][hapmap]
rs4815417	1.00[JPT][hapmap]
rs4815436	1.00[JPT][hapmap]
rs58184048	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58877578	0.90[EUR][1000 genomes]
rs59324912	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59546510	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6037095	1.00[JPT][hapmap]
rs6037097	1.00[JPT][hapmap]
rs6037103	1.00[JPT][hapmap]
rs6037105	1.00[JPT][hapmap]
rs6037128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6037133	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6037161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6037164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6037166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6037167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6037168	0.80[EUR][1000 genomes]
rs6050513	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050515	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6050532	1.00[JPT][hapmap]
rs6050544	0.86[JPT][hapmap]
rs6050559	1.00[JPT][hapmap]
rs6050561	1.00[JPT][hapmap]
rs6050565	1.00[JPT][hapmap]
rs6050567	1.00[JPT][hapmap]
rs6050573	1.00[JPT][hapmap]
rs6050590	1.00[JPT][hapmap]
rs6050594	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050597	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050598	1.00[JPT][hapmap]
rs6050599	1.00[JPT][hapmap]
rs6050611	1.00[JPT][hapmap]
rs6050626	1.00[JPT][hapmap]
rs6050628	0.82[EUR][1000 genomes]
rs6050651	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050658	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050692	0.90[EUR][1000 genomes]
rs6050709	0.88[EUR][1000 genomes]
rs6050710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs6050712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6050714	0.90[EUR][1000 genomes]
rs6050717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6050720	0.80[EUR][1000 genomes]
rs6050723	0.85[EUR][1000 genomes]
rs6050724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6050725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6050726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6050727	0.85[EUR][1000 genomes]
rs6050729	0.85[EUR][1000 genomes]
rs6050730	0.85[EUR][1000 genomes]
rs6050732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050737	0.80[EUR][1000 genomes]
rs6050743	0.83[EUR][1000 genomes]
rs6050745	0.83[EUR][1000 genomes]
rs6050749	0.83[EUR][1000 genomes]
rs6050753	0.80[EUR][1000 genomes]
rs6050754	0.80[EUR][1000 genomes]
rs6050756	0.80[EUR][1000 genomes]
rs6050767	0.85[EUR][1000 genomes]
rs6050770	0.85[EUR][1000 genomes]
rs6076336	1.00[JPT][hapmap]
rs6083804	1.00[JPT][hapmap]
rs6083805	1.00[JPT][hapmap]
rs6083809	1.00[JPT][hapmap]
rs6083818	1.00[JPT][hapmap]
rs6083828	1.00[JPT][hapmap]
rs6083853	1.00[JPT][hapmap]
rs6083862	0.86[JPT][hapmap]
rs6083886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs6083896	1.00[JPT][hapmap]
rs6083897	0.86[JPT][hapmap]
rs6083899	1.00[JPT][hapmap]
rs6107031	1.00[JPT][hapmap]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115140	1.00[JPT][hapmap]
rs6115159	1.00[JPT][hapmap]
rs6115191	1.00[JPT][hapmap]
rs6115200	1.00[JPT][hapmap]
rs6115214	1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115224	1.00[JPT][hapmap]
rs6115232	1.00[JPT][hapmap]
rs6132848	1.00[JPT][hapmap]
rs6132850	1.00[JPT][hapmap]
rs6138553	1.00[JPT][hapmap]
rs6138556	1.00[JPT][hapmap]
rs6138572	1.00[JPT][hapmap]
rs6138575	1.00[JPT][hapmap]
rs6138588	1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138612	1.00[JPT][hapmap]
rs6515626	1.00[CHB][hapmap]
rs66467007	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66501707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66591653	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66673357	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66927803	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66940055	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67069812	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67184896	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67359112	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67455519	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67482703	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67679582	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67680401	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67921634	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68149491	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68165049	0.82[ASN][1000 genomes]
rs7020	1.00[JPT][hapmap]
rs7261537	0.90[EUR][1000 genomes]
rs7261902	0.90[EUR][1000 genomes]
rs7262450	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7266130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7266592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7267979	1.00[JPT][hapmap]
rs7270835	1.00[JPT][hapmap]
rs7273525	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7274550	0.95[EUR][1000 genomes]
rs73331863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73331878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73333512	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73333513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73337339	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337343	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337346	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337349	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337355	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73337356	0.95[EUR][1000 genomes]
rs73337364	0.95[EUR][1000 genomes]
rs73337366	0.95[EUR][1000 genomes]
rs73337369	0.95[EUR][1000 genomes]
rs73337372	0.95[EUR][1000 genomes]
rs73337394	0.92[EUR][1000 genomes]
rs73337401	0.88[EUR][1000 genomes]
rs73339323	0.92[EUR][1000 genomes]
rs73339335	0.92[EUR][1000 genomes]
rs73339360	0.90[EUR][1000 genomes]
rs73339379	0.92[EUR][1000 genomes]
rs73339383	0.87[EUR][1000 genomes]
rs73341305	0.82[EUR][1000 genomes]
rs73341314	0.85[EUR][1000 genomes]
rs73341328	0.85[EUR][1000 genomes]
rs73341365	0.85[EUR][1000 genomes]
rs73597810	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73597811	0.82[ASN][1000 genomes]
rs73597812	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73597813	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73598373	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73612665	0.80[EUR][1000 genomes]
rs73614590	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73614591	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73614594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs742435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs742436	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs761025	1.00[JPT][hapmap]
rs8115484	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8115742	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8117181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8117253	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8120065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs8120594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs8120972	0.95[EUR][1000 genomes]
rs8121013	0.83[EUR][1000 genomes]
rs8124539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs8125002	0.85[EUR][1000 genomes]
rs8126111	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8126236	0.83[EUR][1000 genomes]
rs8184820	1.00[JPT][hapmap]
rs84816	1.00[JPT][hapmap]
rs928121	1.00[JPT][hapmap]
rs9927	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063494	chr20:25067286-25468557	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv1065101	chr20:25068046-25466542	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv544220	chr20:25068046-25466542	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv531480	chr20:25070067-25472684	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv585746	chr20:25071454-25470056	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv531481	chr20:25080583-25448944	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv949479	chr20:25096494-25467359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv1061109	chr20:25101715-25472685	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv544221	chr20:25101715-25472685	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv482647	chr20:25308912-25481982	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
14	nsv1056997	chr20:25316663-25492339	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv1061398	chr20:25370106-25444076	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv1059494	chr20:25377602-25441835	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
18	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7260843	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs7260843	ZNF337	cis	Thyroid	GTEx
rs7260843	ZNF337	Cis_1M	lymphoblastoid	RTeQTL
rs7260843	RP4-694B14.5	cis	lung	GTEx
rs7260843	RP4-694B14.5	cis	Thyroid	GTEx
rs7260843	ZNF337	cis	lung	GTEx

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25389000-25433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr20:25389600-25432200	Weak transcription	Fetal Brain Male	brain
3	chr20:25389800-25432600	Weak transcription	Esophagus	oesophagus
4	chr20:25390000-25434800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr20:25390600-25433400	Weak transcription	Brain Germinal Matrix	brain
6	chr20:25392200-25430800	Strong transcription	Dnd41	blood
7	chr20:25399800-25433600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr20:25399800-25434800	Weak transcription	NHLF	lung
9	chr20:25402800-25445200	Weak transcription	NHDF-Ad	bronchial
10	chr20:25406000-25432600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:25409000-25432800	Weak transcription	K562	blood
12	chr20:25412200-25433600	Weak transcription	Spleen	Spleen
13	chr20:25412400-25432200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr20:25412600-25440200	Weak transcription	Placenta	Placenta
15	chr20:25413800-25430600	Weak transcription	Aorta	Aorta
16	chr20:25414200-25436000	Weak transcription	Primary T cells from cord blood	blood
17	chr20:25415400-25433600	Weak transcription	Pancreas	Pancrea
18	chr20:25415600-25432200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr20:25415600-25432400	Weak transcription	Ovary	ovary
20	chr20:25418200-25431600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr20:25418200-25432600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr20:25418200-25434800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr20:25418200-25436600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr20:25418200-25445200	Weak transcription	HSMM	muscle
25	chr20:25418400-25432400	Weak transcription	Fetal Heart	heart
26	chr20:25418400-25433600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr20:25418800-25431000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr20:25418800-25439400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr20:25419000-25431400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr20:25423400-25433200	Strong transcription	A549	lung
31	chr20:25424000-25435600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr20:25425400-25432400	Weak transcription	Adipose Nuclei	Adipose
33	chr20:25425600-25434800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr20:25425600-25453200	Weak transcription	Small Intestine	intestine
35	chr20:25426400-25450200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr20:25426600-25432600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr20:25426800-25432400	Weak transcription	Fetal Intestine Large	intestine
38	chr20:25427200-25431800	Weak transcription	Fetal Lung	lung
39	chr20:25427200-25435400	Weak transcription	NH-A	brain
40	chr20:25427200-25488200	Weak transcription	Stomach Mucosa	stomach
41	chr20:25427400-25433000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr20:25427400-25433600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr20:25427400-25433600	Weak transcription	HUVEC	blood vessel
44	chr20:25427400-25435400	Weak transcription	Fetal Kidney	kidney
45	chr20:25427400-25442400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr20:25427600-25442200	Weak transcription	GM12878-XiMat	blood
47	chr20:25427600-25446200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr20:25428000-25434800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr20:25428000-25434800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr20:25428400-25431200	Weak transcription	Fetal Intestine Small	intestine

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