Variant report

Variant	rs2500432
Chromosome Location	chr20:25290512-25290513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr20:25289209-25291557	A549	lung:	n/a	chr20:25289780-25289793 chr20:25290452-25290459 chr20:25289743-25289757 chr20:25291177-25291194 chr20:25291519-25291533 chr20:25290547-25290554 chr20:25289542-25289555 chr20:25291179-25291193
2	EP300	chr20:25289824-25292233	SK-N-SH	brain:	n/a	chr20:25291160-25291170
3	PBX3	chr20:25289648-25291612	A549	lung:	n/a	n/a
4	SP1	chr20:25289398-25292091	A549	lung:	n/a	chr20:25290306-25290318 chr20:25290412-25290425 chr20:25291245-25291259 chr20:25290606-25290620
5	BCL3	chr20:25289507-25291993	A549	lung:	n/a	chr20:25291542-25291551 chr20:25291513-25291522 chr20:25290811-25290824
6	TCF12	chr20:25289166-25292364	A549	lung:	n/a	chr20:25289495-25289502 chr20:25292254-25292264 chr20:25291161-25291170 chr20:25290813-25290823
7	POLR2A	chr20:25290239-25290927	GM12892	blood:	n/a	n/a
8	TFAP2C	chr20:25290027-25291272	Hela-S3	cervix:	n/a	n/a
9	RCOR1	chr20:25290042-25291648	HepG2	liver:	n/a	n/a
10	FOS	chr20:25290131-25291283	MCF10A-Er-Src	breast:	n/a	chr20:25291097-25291108 chr20:25290257-25290271
11	POLR2A	chr20:25290353-25291358	SK-N-SH	brain:	n/a	n/a
12	SP1	chr20:25289446-25292040	A549	lung:	n/a	chr20:25290306-25290318 chr20:25290412-25290425 chr20:25291245-25291259 chr20:25290606-25290620
13	CTCF	chr20:25290400-25290550	HepG2	liver:	n/a	n/a
14	MAFF	chr20:25290145-25291697	HepG2	liver:	n/a	chr20:25291154-25291172
15	TCF12	chr20:25289897-25291401	A549	lung:	n/a	chr20:25291161-25291170 chr20:25290813-25290823
16	JUN	chr20:25290042-25291423	K562	blood:	n/a	chr20:25290257-25290271
17	FOS	chr20:25290067-25290695	MCF10A-Er-Src	breast:	n/a	chr20:25290257-25290271
18	ATF3	chr20:25289913-25291387	A549	lung:	n/a	n/a
19	FOSL1	chr20:25289470-25291525	HCT-116	colon:	n/a	chr20:25289710-25289720 chr20:25289712-25289723 chr20:25289711-25289718 chr20:25289711-25289719 chr20:25289711-25289719 chr20:25290257-25290271
20	GATA3	chr20:25289364-25292231	A549	lung:	n/a	chr20:25291544-25291554
21	FOSL2	chr20:25289511-25291556	HepG2	liver:	n/a	chr20:25289710-25289720 chr20:25289712-25289723 chr20:25289711-25289718 chr20:25289711-25289719 chr20:25289711-25289719 chr20:25290257-25290271
22	JUND	chr20:25290041-25291749	HepG2	liver:	n/a	chr20:25291097-25291108 chr20:25290257-25290271
23	BHLHE40	chr20:25290072-25291508	K562	blood:	n/a	chr20:25290802-25290818
24	POLR2A	chr20:25289166-25292265	A549	lung:	n/a	n/a
25	POLR2A	chr20:25290233-25291486	K562	blood:	n/a	n/a
26	SIN3AK20	chr20:25289925-25292263	MCF-7	breast:	n/a	n/a
27	EP300	chr20:25289381-25292172	A549	lung:	n/a	chr20:25291160-25291170 chr20:25289542-25289555
28	MAFK	chr20:25290441-25291578	K562	blood:	n/a	chr20:25291150-25291170 chr20:25291152-25291168
29	TCF7L2	chr20:25289802-25291356	HCT-116	colon:	n/a	n/a
30	RCOR1	chr20:25290489-25291491	K562	blood:	n/a	n/a
31	FOSL2	chr20:25289448-25291968	A549	lung:	n/a	chr20:25289710-25289720 chr20:25289712-25289723 chr20:25289711-25289718 chr20:25289711-25289719 chr20:25289711-25289719 chr20:25290257-25290271
32	NR2F2	chr20:25289866-25291539	MCF-7	breast:	n/a	n/a
33	RAD21	chr20:25290087-25292154	SK-N-SH	brain:	n/a	chr20:25290577-25290591
34	SIN3AK20	chr20:25289742-25290832	A549	lung:	n/a	n/a
35	JUND	chr20:25289977-25291345	Hela-S3	cervix:	n/a	chr20:25291097-25291108 chr20:25290257-25290271
36	CEBPB	chr20:25290444-25291365	HepG2	liver:	n/a	n/a
37	RAD21	chr20:25290429-25291644	HCT-116	colon:	n/a	chr20:25290577-25290591
38	MAX	chr20:25290311-25291357	K562	blood:	n/a	n/a
39	CTCF	chr20:25290400-25290550	SK-N-SH_RA	brain:	n/a	n/a
40	NR3C1	chr20:25289437-25290519	A549	lung:	n/a	chr20:25289780-25289793 chr20:25290452-25290459 chr20:25289743-25289757 chr20:25289542-25289555
41	MAX	chr20:25290050-25291412	HepG2	liver:	n/a	n/a
42	POLR2A	chr20:25290440-25290673	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr20:25289215-25291697	A549	lung:	n/a	n/a
44	TBP	chr20:25290456-25290737	Hela-S3	cervix:	n/a	n/a
45	MAX	chr20:25289431-25292216	A549	lung:	n/a	chr20:25289711-25289720
46	MAZ	chr20:25289218-25292439	IMR90	lung:	n/a	chr20:25289711-25289720
47	CTCF	chr20:25290460-25290610	HCPEpiC	choroid plexus:	n/a	n/a
48	CTCF	chr20:25290420-25290570	AG04449	skin:	n/a	n/a
49	PBX3	chr20:25289879-25292081	SK-N-SH	brain:	n/a	n/a
50	NR2F2	chr20:25289900-25291481	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr20:25290481..25292963-chr20:25369877..25371974,2	MCF-7	breast:
2	chr20:25280437..25282197-chr20:25289729..25292271,3	K562	blood:
3	chr20:25202638..25204981-chr20:25290392..25292529,2	MCF-7	breast:

Variant related genes	Relation type
ABHD12	TF binding region
ENSG00000100997	Chromatin interaction
ENSG00000197586	Chromatin interaction

Extended variants
information (count: 316 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:299)

rs_ID	r²[population]
rs1007707	1.00[JPT][hapmap]
rs1044573	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs1046073	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1047171	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs1077889	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10966	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11087521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1109100	1.00[JPT][hapmap]
rs11100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1118963	0.93[EUR][1000 genomes]
rs1130694	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11698185	0.86[JPT][hapmap]
rs11699203	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11699953	0.83[EUR][1000 genomes]
rs12428	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs13038092	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1473695	0.86[JPT][hapmap]
rs1555330	0.83[EUR][1000 genomes]
rs16987767	0.89[CHD][hapmap];0.86[JPT][hapmap]
rs16987786	1.00[JPT][hapmap]
rs16987789	1.00[JPT][hapmap]
rs16987799	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1888995	0.81[ASN][1000 genomes]
rs1888997	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1888998	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888999	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027003	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2027004	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2145126	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2151144	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2227890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2227892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257420	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2257432	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257464	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257496	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2257705	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257808	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257809	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257982	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257985	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257988	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2257991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2258066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2258135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2258201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2258563	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2258617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2258719	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2258728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2258769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2258879	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2258884	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2259837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2259873	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2259926	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2259928	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2259956	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260997	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2261109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261115	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261698	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261720	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261747	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2261753	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261785	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261790	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261794	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2261796	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2263204	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2268879	1.00[JPT][hapmap]
rs2297496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2387880	0.81[EUR][1000 genomes]
rs2387881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2387882	0.81[EUR][1000 genomes]
rs2387883	0.81[EUR][1000 genomes]
rs2387884	0.81[EUR][1000 genomes]
rs2387885	0.81[ASN][1000 genomes]
rs2424698	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2424699	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2424700	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2424708	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424710	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424713	0.81[ASN][1000 genomes]
rs2424719	1.00[JPT][hapmap]
rs2474766	0.93[EUR][1000 genomes]
rs2474769	0.93[EUR][1000 genomes]
rs2474777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2474780	0.82[CEU][hapmap]
rs2482911	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482913	0.82[EUR][1000 genomes]
rs2482918	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482919	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2482923	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2482927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482928	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482930	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482931	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482932	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482937	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2482940	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2482941	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2482943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482948	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2500400	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2500401	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2500404	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2500405	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2500406	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs2500417	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500418	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500430	0.81[EUR][1000 genomes]
rs2500433	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500443	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2500446	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2500448	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2856	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs2990512	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3002698	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3002702	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs33999482	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34645895	0.82[EUR][1000 genomes]
rs372678	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3746337	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs3761117	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs397119	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs398036	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs401166	1.00[JPT][hapmap]
rs417110	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs417130	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs422844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs424487	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs426563	1.00[JPT][hapmap]
rs428278	1.00[JPT][hapmap]
rs431579	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs433352	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs4355182	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs437635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4423675	0.82[CEU][hapmap]
rs442834	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs446649	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs449370	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs449703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs454723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4619688	0.93[EUR][1000 genomes]
rs4813557	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4813561	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4813562	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4813563	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4813566	0.81[EUR][1000 genomes]
rs4815404	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815405	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4815407	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815408	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815409	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815411	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815412	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815413	0.82[CEU][hapmap]
rs4815414	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815417	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs4815418	0.81[EUR][1000 genomes]
rs4815420	0.81[EUR][1000 genomes]
rs4815424	0.82[EUR][1000 genomes]
rs6037062	0.80[EUR][1000 genomes]
rs6037069	0.90[EUR][1000 genomes]
rs6037083	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037085	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6037086	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6037095	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037096	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037097	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6037099	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6037103	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs6037105	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs6037128	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050425	1.00[JPT][hapmap]
rs6050427	1.00[JPT][hapmap]
rs6050431	0.86[JPT][hapmap]
rs6050477	0.85[CEU][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap]
rs6050481	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs6050482	0.90[EUR][1000 genomes]
rs6050513	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050515	0.85[JPT][hapmap]
rs6050532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050535	0.83[ASN][1000 genomes]
rs6050542	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050547	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050555	0.88[ASN][1000 genomes]
rs6050556	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050559	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050561	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050562	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050563	0.87[EUR][1000 genomes]
rs6050564	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6050565	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6050566	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6050567	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6050573	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6050583	0.81[EUR][1000 genomes]
rs6050590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6050598	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs6050599	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050601	0.81[ASN][1000 genomes]
rs6050611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs6050617	0.96[CEU][hapmap]
rs6050626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs6076336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6076339	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6076345	0.81[EUR][1000 genomes]
rs6083776	0.86[JPT][hapmap]
rs6083799	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083801	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6083804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083805	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083809	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083813	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083817	0.80[EUR][1000 genomes]
rs6083818	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083824	0.82[CEU][hapmap]
rs6083825	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083828	0.80[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs6083844	0.81[EUR][1000 genomes]
rs6083845	0.81[CEU][hapmap]
rs6083853	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083856	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083862	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs6107015	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs6107017	0.83[EUR][1000 genomes]
rs6107019	0.89[EUR][1000 genomes]
rs6107027	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs6107031	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6107033	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6107045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs6107046	0.81[ASN][1000 genomes]
rs6107047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs6115093	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6115094	0.82[CHB][hapmap]
rs6115099	0.82[EUR][1000 genomes]
rs6115100	0.93[EUR][1000 genomes]
rs6115101	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs6115109	0.93[EUR][1000 genomes]
rs6115118	0.82[EUR][1000 genomes]
rs6115140	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115146	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6115153	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6115159	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6115191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs6115200	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap]
rs6132819	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs6132820	0.93[EUR][1000 genomes]
rs6132821	0.83[EUR][1000 genomes]
rs6132824	0.83[EUR][1000 genomes]
rs6132826	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6138537	0.86[JPT][hapmap]
rs6138545	0.87[EUR][1000 genomes]
rs6138546	0.89[EUR][1000 genomes]
rs6138550	0.93[EUR][1000 genomes]
rs6138553	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs6138554	0.86[EUR][1000 genomes]
rs6138555	0.83[EUR][1000 genomes]
rs6138556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs6138572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6138575	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.81[ASN][1000 genomes]
rs6138588	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap]
rs66999585	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7267979	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7268053	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7270835	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7343481	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs742435	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs7453	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs761025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8113919	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8113968	0.82[EUR][1000 genomes]
rs8115257	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs8117181	1.00[JPT][hapmap]
rs8123949	0.81[EUR][1000 genomes]
rs8124539	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs8125868	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8184820	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs84816	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs869358	0.82[CEU][hapmap]
rs884613	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910996	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs910997	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9927	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1063494	chr20:25067286-25468557	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv1065101	chr20:25068046-25466542	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv544220	chr20:25068046-25466542	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv531480	chr20:25070067-25472684	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv585746	chr20:25071454-25470056	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
11	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv531481	chr20:25080583-25448944	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv949479	chr20:25096494-25467359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
14	nsv1061109	chr20:25101715-25472685	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
15	nsv544221	chr20:25101715-25472685	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
16	nsv833948	chr20:25231726-25410540	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
17	esv1798601	chr20:25250122-25305949	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs2500432	ABHD12	cis	lymphoblastoid	seeQTL
rs2500432	PYGB	cis	cerebellum	SCAN
rs2500432	ABHD12	cis	Temporal Cortex	GTEx
rs2500432	NINL	cis	parietal	SCAN
rs2500432	ABHD12	cis	Nerve Tibial	GTEx
rs2500432	ABHD12	cis	Frontal Cortex	GTEx
rs2500432	ENTPD6	cis	cerebellum	SCAN
rs2500432	ABHD12	cis	uninvolved skin	skin_eQTL
rs2500432	GINS1	Cis_1M	lymphoblastoid	RTeQTL
rs2500432	ABHD12	cis	multi-tissue	Pritchard
rs2500432	ABHD12	cis	parietal	SCAN
rs2500432	NINL	cis	cerebellum	SCAN
rs2500432	ABHD12	cis	Cerebellum	GTEx
rs2500432	ABHD12	cis	cerebellum	SCAN
rs2500432	PYGB	cis	multi-tissue	Pritchard
rs2500432	ABHD12	cis	lesional skin	skin_eQTL
rs2500432	GINS1	cis	parietal	SCAN
rs2500432	C20orf22	cis	multi-tissue	Pritchard
rs2500432	DCLRE1C	trans	multi-tissue	Pritchard
rs2500432	HDHD4	cis	multi-tissue	Pritchard
rs2500432	PYGB	cis	lymphoblastoid	seeQTL
rs2500432	ABHD12	cis	Brain Pons	GTEx
rs2500432	PYGB	cis	Whole Blood	GTEx
rs2500432	ABHD12	Cis_1M	lymphoblastoid	RTeQTL
rs2500432	PYGB	cis	Lymphoblastoid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25230400-25291600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:25235600-25291200	Weak transcription	Fetal Kidney	kidney
3	chr20:25256000-25299400	Weak transcription	Fetal Brain Male	brain
4	chr20:25259000-25290800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr20:25261600-25291000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr20:25266600-25291200	Weak transcription	Primary B cells from cord blood	blood
7	chr20:25267000-25291200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr20:25271400-25290600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr20:25271600-25291200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:25275800-25290600	Strong transcription	Thymus	Thymus
11	chr20:25277600-25291000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr20:25278800-25305600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr20:25280000-25290600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr20:25282600-25290600	Weak transcription	Right Atrium	heart
15	chr20:25282800-25290600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr20:25283000-25291200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr20:25284000-25291000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr20:25284600-25290800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr20:25284600-25304000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr20:25285200-25291000	Weak transcription	Aorta	Aorta
21	chr20:25285600-25291600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr20:25285800-25290600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr20:25286800-25292200	Strong transcription	Dnd41	blood
24	chr20:25287000-25290600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr20:25287200-25291000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr20:25287200-25291000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr20:25287600-25290800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr20:25287800-25291200	Enhancers	Fetal Heart	heart
29	chr20:25288200-25291200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr20:25288200-25291400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr20:25288400-25291000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr20:25288400-25294400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr20:25288600-25291000	Genic enhancers	GM12878-XiMat	blood
34	chr20:25288800-25290800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr20:25289200-25292600	Enhancers	Stomach Mucosa	stomach
36	chr20:25289200-25304600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr20:25289400-25290600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr20:25289400-25290600	Enhancers	NHDF-Ad	bronchial
39	chr20:25289400-25292200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr20:25289400-25292600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr20:25289400-25302400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr20:25289600-25290600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr20:25289600-25290600	Genic enhancers	Fetal Muscle Trunk	muscle
44	chr20:25289600-25290600	Enhancers	K562	blood
45	chr20:25289600-25290800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr20:25289600-25290800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr20:25289600-25290800	Strong transcription	Fetal Lung	lung
48	chr20:25289600-25291000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr20:25289600-25291000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr20:25289600-25291200	Enhancers	Primary monocytes fromperipheralblood	blood

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