Variant report

Variant	rs2990512
Chromosome Location	chr20:25332906-25332907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25326249..25327757-chr20:25332487..25334812,2	MCF-7	breast:
2	chr20:25332164..25334022-chr20:25369881..25372493,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100997	Chromatin interaction

Extended variants
information (count: 303 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:287)

rs_ID	r²[population]
rs1046073	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1047171	0.82[EUR][1000 genomes]
rs1077889	0.87[EUR][1000 genomes]
rs10966	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11087520	0.85[EUR][1000 genomes]
rs11087521	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11100	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1118963	0.81[EUR][1000 genomes]
rs1130694	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11699203	0.84[EUR][1000 genomes]
rs12428	0.82[EUR][1000 genomes]
rs13038834	0.85[EUR][1000 genomes]
rs1888995	0.81[ASN][1000 genomes]
rs1888997	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1888998	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1888999	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2027003	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2027004	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2145126	0.87[EUR][1000 genomes]
rs2151144	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2179459	0.81[EUR][1000 genomes]
rs2184000	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2227890	0.87[EUR][1000 genomes]
rs2227892	0.87[EUR][1000 genomes]
rs2257233	0.87[EUR][1000 genomes]
rs2257420	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2257432	0.88[EUR][1000 genomes]
rs2257461	0.87[EUR][1000 genomes]
rs2257464	0.86[EUR][1000 genomes]
rs2257496	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257705	0.87[EUR][1000 genomes]
rs2257712	0.87[EUR][1000 genomes]
rs2257808	0.88[EUR][1000 genomes]
rs2257809	0.88[EUR][1000 genomes]
rs2257982	0.88[EUR][1000 genomes]
rs2257985	0.87[EUR][1000 genomes]
rs2257988	0.88[EUR][1000 genomes]
rs2257991	0.88[EUR][1000 genomes]
rs2258066	0.88[EUR][1000 genomes]
rs2258135	0.87[EUR][1000 genomes]
rs2258201	0.88[EUR][1000 genomes]
rs2258563	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2258617	0.88[EUR][1000 genomes]
rs2258719	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2258728	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2258769	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2258879	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2258884	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2259837	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2259873	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2259926	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2259928	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2259956	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2260997	0.84[EUR][1000 genomes]
rs2261109	0.87[EUR][1000 genomes]
rs2261115	0.87[EUR][1000 genomes]
rs2261698	0.87[EUR][1000 genomes]
rs2261720	0.86[EUR][1000 genomes]
rs2261747	0.86[EUR][1000 genomes]
rs2261753	0.87[EUR][1000 genomes]
rs2261784	0.87[EUR][1000 genomes]
rs2261785	0.87[EUR][1000 genomes]
rs2261790	0.86[EUR][1000 genomes]
rs2261794	0.87[EUR][1000 genomes]
rs2261796	0.87[EUR][1000 genomes]
rs2263204	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297496	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297497	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2387880	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2387881	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2387882	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2387883	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2387884	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2387885	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2387887	0.82[EUR][1000 genomes]
rs2387891	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2424698	0.85[EUR][1000 genomes]
rs2424699	0.80[EUR][1000 genomes]
rs2424700	0.88[EUR][1000 genomes]
rs2424704	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2424708	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424710	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424711	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424712	0.82[EUR][1000 genomes]
rs2424713	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2424714	0.82[EUR][1000 genomes]
rs2424715	0.82[EUR][1000 genomes]
rs2424716	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2474766	0.81[EUR][1000 genomes]
rs2474769	0.81[EUR][1000 genomes]
rs2474777	0.88[EUR][1000 genomes]
rs2482906	0.86[EUR][1000 genomes]
rs2482911	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482913	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2482918	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482919	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2482923	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2482927	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482928	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482930	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482931	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482932	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482937	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2482940	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2482941	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2482943	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482948	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500399	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500400	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500401	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500404	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500405	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500406	0.81[ASN][1000 genomes]
rs2500417	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500418	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500424	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500432	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2500433	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500436	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500443	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2500446	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500448	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2856	0.82[EUR][1000 genomes]
rs3002698	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3002702	0.88[EUR][1000 genomes]
rs33999482	0.84[EUR][1000 genomes]
rs34645895	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs372678	0.81[EUR][1000 genomes]
rs3761117	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs397119	0.85[EUR][1000 genomes]
rs398036	0.85[EUR][1000 genomes]
rs401166	0.84[EUR][1000 genomes]
rs404394	0.84[EUR][1000 genomes]
rs408853	0.84[EUR][1000 genomes]
rs416745	0.84[EUR][1000 genomes]
rs417110	0.81[EUR][1000 genomes]
rs417130	0.81[EUR][1000 genomes]
rs422424	0.84[EUR][1000 genomes]
rs422844	0.84[EUR][1000 genomes]
rs424487	0.81[EUR][1000 genomes]
rs431579	0.81[EUR][1000 genomes]
rs433352	0.81[EUR][1000 genomes]
rs4355182	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs437635	0.81[EUR][1000 genomes]
rs442834	0.81[EUR][1000 genomes]
rs446649	0.81[EUR][1000 genomes]
rs447722	0.84[EUR][1000 genomes]
rs448396	0.84[EUR][1000 genomes]
rs449370	0.82[EUR][1000 genomes]
rs449703	0.81[EUR][1000 genomes]
rs453329	0.84[EUR][1000 genomes]
rs454723	0.85[EUR][1000 genomes]
rs4619688	0.81[EUR][1000 genomes]
rs4813557	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4813561	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4813562	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4813563	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4813566	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4815404	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815405	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4815407	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815408	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815409	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815411	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815412	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815414	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815417	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4815418	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4815420	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4815421	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4815423	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4815424	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4815426	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6037083	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037085	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6037086	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6037095	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037096	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6037097	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6037099	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6037103	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6037105	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6037120	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6037121	0.82[EUR][1000 genomes]
rs6037125	0.81[EUR][1000 genomes]
rs6037126	0.80[EUR][1000 genomes]
rs6050481	0.81[EUR][1000 genomes]
rs6050532	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050535	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050542	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6050544	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050547	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050555	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050556	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050559	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050561	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050562	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050563	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6050564	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050565	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050566	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050567	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050573	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6050583	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6050590	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6050595	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6050598	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6050599	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6050600	0.83[EUR][1000 genomes]
rs6050601	0.81[ASN][1000 genomes]
rs6050602	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6050609	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6050611	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050617	0.82[EUR][1000 genomes]
rs6050626	0.82[EUR][1000 genomes]
rs6050629	0.81[EUR][1000 genomes]
rs6050630	0.82[EUR][1000 genomes]
rs6050631	0.85[EUR][1000 genomes]
rs6050632	0.82[EUR][1000 genomes]
rs6076336	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6076339	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6076345	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6076346	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083799	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083801	0.93[ASN][1000 genomes]
rs6083804	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083805	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083809	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083813	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083817	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083818	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6083825	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6083826	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6083828	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6083838	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6083844	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083847	0.86[EUR][1000 genomes]
rs6083853	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083855	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083856	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083862	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6107031	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6107033	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6107044	0.82[EUR][1000 genomes]
rs6107045	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6107046	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6107047	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6115100	0.81[EUR][1000 genomes]
rs6115101	0.81[EUR][1000 genomes]
rs6115109	0.81[EUR][1000 genomes]
rs6115140	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6115146	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6115153	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6115159	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6115182	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6115183	0.81[EUR][1000 genomes]
rs6115185	0.82[EUR][1000 genomes]
rs6115191	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6115200	0.82[EUR][1000 genomes]
rs6132820	0.81[EUR][1000 genomes]
rs6132826	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6132833	0.85[EUR][1000 genomes]
rs6132835	0.83[EUR][1000 genomes]
rs6138550	0.81[EUR][1000 genomes]
rs6138553	0.81[EUR][1000 genomes]
rs6138556	0.81[EUR][1000 genomes]
rs6138571	0.84[EUR][1000 genomes]
rs6138572	0.85[EUR][1000 genomes]
rs6138575	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6138588	0.82[EUR][1000 genomes]
rs6515651	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66999585	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7019	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7020	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7267979	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7268053	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7270835	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7343481	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs761025	0.85[EUR][1000 genomes]
rs8113919	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8113968	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8123949	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8125868	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs884613	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs910996	0.87[EUR][1000 genomes]
rs910997	0.88[EUR][1000 genomes]
rs9927	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063494	chr20:25067286-25468557	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv1065101	chr20:25068046-25466542	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv544220	chr20:25068046-25466542	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv531480	chr20:25070067-25472684	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv585746	chr20:25071454-25470056	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv531481	chr20:25080583-25448944	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv949479	chr20:25096494-25467359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv1061109	chr20:25101715-25472685	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv544221	chr20:25101715-25472685	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv833948	chr20:25231726-25410540	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
14	nsv482647	chr20:25308912-25481982	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
15	nsv1056997	chr20:25316663-25492339	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	nsv1061058	chr20:25327960-25388841	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2990512	ABHD12	cis	Nerve Tibial	GTEx
rs2990512	ABHD12	Cis_1M	lymphoblastoid	RTeQTL
rs2990512	PYGB	cis	Whole Blood	GTEx
rs2990512	GINS1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25292600-25351600	Weak transcription	NHDF-Ad	bronchial
2	chr20:25305400-25335000	Weak transcription	Primary B cells from cord blood	blood
3	chr20:25306200-25335800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr20:25309600-25333200	Weak transcription	NHLF	lung
5	chr20:25310400-25334400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:25310600-25334200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:25317600-25335600	Weak transcription	Small Intestine	intestine
8	chr20:25319200-25334200	Weak transcription	Right Ventricle	heart
9	chr20:25319200-25348400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:25319400-25337000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr20:25319600-25334600	Weak transcription	Fetal Brain Female	brain
12	chr20:25319600-25337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:25319800-25334400	Weak transcription	Fetal Kidney	kidney
14	chr20:25320000-25336800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr20:25321200-25334200	Weak transcription	Ovary	ovary
16	chr20:25322200-25334200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr20:25322400-25336600	Weak transcription	Fetal Heart	heart
18	chr20:25323400-25333400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr20:25323600-25333000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr20:25323600-25333200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr20:25324200-25333400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr20:25324200-25337200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr20:25324400-25334200	Weak transcription	Left Ventricle	heart
24	chr20:25325400-25334200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr20:25325400-25334200	Weak transcription	GM12878-XiMat	blood
26	chr20:25325400-25336600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr20:25325600-25333600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr20:25325600-25334200	Weak transcription	A549	lung
29	chr20:25325600-25336600	Weak transcription	Dnd41	blood
30	chr20:25327400-25361400	Weak transcription	Primary T cells from cord blood	blood
31	chr20:25327800-25335600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr20:25328000-25337000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr20:25330400-25334400	Weak transcription	Aorta	Aorta
34	chr20:25331600-25333400	Weak transcription	Pancreas	Pancrea
35	chr20:25331600-25335600	Weak transcription	HepG2	liver
36	chr20:25331800-25333200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr20:25332000-25333000	Weak transcription	Brain Angular Gyrus	brain
38	chr20:25332000-25333400	Weak transcription	Fetal Intestine Large	intestine
39	chr20:25332000-25334000	Weak transcription	Brain Anterior Caudate	brain
40	chr20:25332200-25333200	Weak transcription	Brain Hippocampus Middle	brain
41	chr20:25332200-25333400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr20:25332200-25333400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr20:25332200-25333400	Weak transcription	Brain Substantia Nigra	brain
44	chr20:25332200-25333400	Weak transcription	Colon Smooth Muscle	Colon
45	chr20:25332200-25333600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr20:25332200-25333800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr20:25332200-25334000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr20:25332200-25334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr20:25332200-25334000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr20:25332200-25334000	Weak transcription	Fetal Intestine Small	intestine

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