Variant report

Variant	rs13038834
Chromosome Location	chr20:25441433-25441434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:25441370-25441815	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:25439743-25442198	HepG2	liver:	n/a	n/a
3	FOSL2	chr20:25441345-25441989	HepG2	liver:	n/a	n/a
4	POLR2A	chr20:25441384-25441596	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25431598..25433481-chr20:25439717..25442541,2	MCF-7	breast:

Variant related genes	Relation type
NINL	TF binding region

Extended variants
information (count: 239 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:215)

rs_ID	r²[population]
rs1047171	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11087520	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11087521	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11699203	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12428	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1541061	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1888995	0.88[ASN][1000 genomes]
rs1888997	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1985737	0.81[EUR][1000 genomes]
rs2027003	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2027004	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2104734	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2151144	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2179459	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2184000	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2263204	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297496	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297497	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2387880	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2387881	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2387882	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2387883	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2387884	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2387885	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2387887	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2387891	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2424712	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2424713	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424714	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2424715	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2424716	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482906	0.89[EUR][1000 genomes]
rs2482911	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2482913	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2482918	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2482919	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2482923	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2482927	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2482928	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2482930	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2482931	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2482932	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2482937	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2482940	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2482941	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2482943	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2482948	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500399	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500400	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500401	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500404	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500405	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500406	0.88[ASN][1000 genomes]
rs2500417	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2500418	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2500423	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2500424	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2500433	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500436	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2500443	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2500446	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500448	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2856	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2990512	0.85[EUR][1000 genomes]
rs3002698	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34645895	0.87[EUR][1000 genomes]
rs367666	0.84[EUR][1000 genomes]
rs372678	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3761117	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3827014	0.83[EUR][1000 genomes]
rs397119	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs398036	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs401166	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs404394	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs408853	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs416745	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs417110	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs417130	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs422424	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs422844	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs424487	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4280527	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs431579	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs433352	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs437635	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs442834	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs446649	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs447722	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs448396	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs449370	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs449703	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs453329	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs454723	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4813561	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4813562	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4813563	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4813566	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815404	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815405	0.85[EUR][1000 genomes]
rs4815407	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815408	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815409	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815411	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815412	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815414	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4815417	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815418	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815420	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815421	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815423	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815424	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815425	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4815426	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6037085	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037086	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6037095	0.88[EUR][1000 genomes]
rs6037096	0.81[EUR][1000 genomes]
rs6037097	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037099	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037103	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6037105	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6037120	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6037121	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6037125	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6037126	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6050532	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050542	0.85[EUR][1000 genomes]
rs6050544	0.86[EUR][1000 genomes]
rs6050547	0.86[EUR][1000 genomes]
rs6050556	0.81[EUR][1000 genomes]
rs6050559	0.87[EUR][1000 genomes]
rs6050561	0.85[EUR][1000 genomes]
rs6050562	0.88[EUR][1000 genomes]
rs6050563	0.86[EUR][1000 genomes]
rs6050564	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050565	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050566	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050567	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050573	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6050583	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050590	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050595	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050598	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050599	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050600	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050601	0.88[ASN][1000 genomes]
rs6050602	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050609	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050611	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050617	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6050626	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6050629	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6050630	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6050631	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6050632	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6076336	0.85[EUR][1000 genomes]
rs6076339	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6076345	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6076346	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6083801	0.81[ASN][1000 genomes]
rs6083804	0.84[EUR][1000 genomes]
rs6083805	0.86[EUR][1000 genomes]
rs6083809	0.84[EUR][1000 genomes]
rs6083813	0.85[EUR][1000 genomes]
rs6083818	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083825	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083828	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6083838	0.92[EUR][1000 genomes]
rs6083844	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6083847	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6083853	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083855	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083856	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083862	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6107031	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6107033	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6107044	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6107045	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6107046	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6107047	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6107052	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6115146	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6115153	0.84[EUR][1000 genomes]
rs6115159	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6115182	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6115183	0.96[EUR][1000 genomes]
rs6115185	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6115191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6115200	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6115204	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6115214	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6115215	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6115229	0.80[EUR][1000 genomes]
rs6132833	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6132835	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6132848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6138571	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6138572	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6138575	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6138588	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6138600	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6138609	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6515651	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66999585	0.80[EUR][1000 genomes]
rs7267979	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7268053	0.84[EUR][1000 genomes]
rs7270835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7343481	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs761025	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8113919	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8113968	0.80[EUR][1000 genomes]
rs8123949	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8125868	0.87[EUR][1000 genomes]
rs84816	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs928121	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063494	chr20:25067286-25468557	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv1065101	chr20:25068046-25466542	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv544220	chr20:25068046-25466542	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv531480	chr20:25070067-25472684	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv585746	chr20:25071454-25470056	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv531481	chr20:25080583-25448944	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv949479	chr20:25096494-25467359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv1061109	chr20:25101715-25472685	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv544221	chr20:25101715-25472685	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv482647	chr20:25308912-25481982	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
14	nsv1056997	chr20:25316663-25492339	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv1061398	chr20:25370106-25444076	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv1059494	chr20:25377602-25441835	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
18	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
21	nsv912828	chr20:25433015-25595175	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	nsv1062452	chr20:25438025-25590278	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv1066066	chr20:25439367-25588016	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv544224	chr20:25439367-25588016	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs13038834	ABHD12	cis	Nerve Tibial	GTEx
rs13038834	ABHD12	cis	multi-tissue	Pritchard
rs13038834	GINS1	Cis_1M	lymphoblastoid	RTeQTL
rs13038834	ABHD12	Cis_1M	lymphoblastoid	RTeQTL
rs13038834	PYGB	cis	Whole Blood	GTEx
rs13038834	PYGB	cis	multi-tissue	Pritchard

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25402800-25445200	Weak transcription	NHDF-Ad	bronchial
2	chr20:25418200-25445200	Weak transcription	HSMM	muscle
3	chr20:25425600-25453200	Weak transcription	Small Intestine	intestine
4	chr20:25426400-25450200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:25427200-25488200	Weak transcription	Stomach Mucosa	stomach
6	chr20:25427400-25442400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr20:25427600-25442200	Weak transcription	GM12878-XiMat	blood
8	chr20:25427600-25446200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr20:25429400-25463200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:25429800-25458800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr20:25430200-25484400	Strong transcription	Fetal Stomach	stomach
12	chr20:25430400-25442000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr20:25431200-25447400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr20:25431800-25442000	Weak transcription	Brain Angular Gyrus	brain
15	chr20:25431800-25484200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr20:25432400-25450400	Strong transcription	Thymus	Thymus
17	chr20:25432600-25452400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr20:25433200-25444200	Weak transcription	Fetal Brain Male	brain
19	chr20:25433200-25445200	Weak transcription	Right Atrium	heart
20	chr20:25434000-25447800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr20:25434200-25447400	Weak transcription	HUVEC	blood vessel
22	chr20:25434400-25460800	Weak transcription	Fetal Heart	heart
23	chr20:25435600-25459000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr20:25435800-25450200	Weak transcription	Fetal Kidney	kidney
25	chr20:25435800-25465600	Weak transcription	NH-A	brain
26	chr20:25436000-25445200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr20:25436000-25448200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr20:25436200-25441600	Weak transcription	Lung	lung
29	chr20:25436200-25441600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr20:25436200-25446000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr20:25436200-25447600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr20:25436200-25465200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr20:25436400-25441600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr20:25436400-25441600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr20:25436400-25441600	Weak transcription	Brain Substantia Nigra	brain
36	chr20:25436400-25441600	Weak transcription	Colon Smooth Muscle	Colon
37	chr20:25436400-25441600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr20:25436400-25441800	Weak transcription	Brain Hippocampus Middle	brain
39	chr20:25436400-25441800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr20:25436400-25445200	Weak transcription	NHLF	lung
41	chr20:25437800-25441600	Strong transcription	Fetal Thymus	thymus
42	chr20:25437800-25454600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr20:25438000-25442000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr20:25438000-25443200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr20:25438000-25450800	Strong transcription	Dnd41	blood
46	chr20:25438000-25452600	Strong transcription	Brain Germinal Matrix	brain
47	chr20:25438000-25456400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr20:25438200-25441600	Strong transcription	Fetal Muscle Leg	muscle
49	chr20:25438200-25449200	Strong transcription	Liver	Liver
50	chr20:25438200-25449400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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