Variant report

Variant rs6050561
Chromosome Location chr20:25334855-25334856
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25292600-25351600 Weak transcription NHDF-Ad bronchial
2 chr20:25305400-25335000 Weak transcription Primary B cells from cord blood blood
3 chr20:25306200-25335800 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr20:25317600-25335600 Weak transcription Small Intestine intestine
5 chr20:25319200-25348400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr20:25319400-25337000 Weak transcription Fetal Muscle Trunk muscle
7 chr20:25319600-25337000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr20:25320000-25336800 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr20:25322400-25336600 Weak transcription Fetal Heart heart
10 chr20:25324200-25337200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr20:25325400-25336600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr20:25325600-25336600 Weak transcription Dnd41 blood
13 chr20:25327400-25361400 Weak transcription Primary T cells from cord blood blood
14 chr20:25327800-25335600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
15 chr20:25328000-25337000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr20:25331600-25335600 Weak transcription HepG2 liver
17 chr20:25332200-25335600 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr20:25332200-25337400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr20:25333000-25337200 Enhancers Brain Angular Gyrus brain
20 chr20:25333200-25335200 Enhancers Rectal Smooth Muscle rectum
21 chr20:25333200-25335600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr20:25333200-25335600 Enhancers Brain Hippocampus Middle brain
23 chr20:25333400-25335200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr20:25333400-25335800 Enhancers HUES64 Cell Line embryonic stem cell
25 chr20:25333400-25338800 Enhancers Brain Substantia Nigra brain
26 chr20:25333600-25336800 Enhancers Brain Cingulate Gyrus brain
27 chr20:25333600-25339200 Enhancers HUES48 Cell Line embryonic stem cell
28 chr20:25333600-25339400 Enhancers Brain Inferior Temporal Lobe brain
29 chr20:25333800-25335200 Enhancers Duodenum Smooth Muscle Duodenum
30 chr20:25334000-25335200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr20:25334000-25335400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr20:25334000-25335400 Enhancers Fetal Intestine Large intestine
33 chr20:25334000-25335400 Enhancers Rectal Mucosa Donor 29 rectum
34 chr20:25334000-25335800 Enhancers HUES6 Cell Line embryonic stem cell
35 chr20:25334000-25336800 Enhancers iPS-20b Cell Line embryonic stem cell
36 chr20:25334000-25337000 Enhancers iPS-18 Cell Line embryonic stem cell
37 chr20:25334000-25337000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr20:25334000-25338000 Enhancers Brain Anterior Caudate brain
39 chr20:25334000-25338600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
40 chr20:25334000-25339000 Enhancers Pancreas Pancrea
41 chr20:25334000-25339400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
42 chr20:25334200-25335000 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr20:25334200-25335000 Enhancers Fetal Stomach stomach
44 chr20:25334200-25335000 Enhancers Right Ventricle heart
45 chr20:25334200-25335000 Enhancers Sigmoid Colon Sigmoid Colon
46 chr20:25334200-25335200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr20:25334200-25335200 Enhancers Thymus Thymus
48 chr20:25334200-25335800 Enhancers Breast Myoepithelial Primary Cells Breast
49 chr20:25334200-25335800 Enhancers Ovary ovary
50 chr20:25334200-25336000 Enhancers Duodenum Mucosa Duodenum

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