Variant report

Variant	rs16987786
Chromosome Location	chr20:25474214-25474215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25471295..25474295-chr20:25476336..25479406,5	MCF-7	breast:
2	chr20:25445981..25448619-chr20:25473407..25476003,2	K562	blood:

Variant related genes	Relation type
ENSG00000101004	Chromatin interaction

Extended variants
information (count: 282 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:262)

rs_ID	r²[population]
rs1047171	1.00[JPT][hapmap]
rs10485776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11100	1.00[JPT][hapmap]
rs1130694	1.00[JPT][hapmap]
rs11699203	1.00[JPT][hapmap]
rs12428	1.00[JPT][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987767	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16987789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16987799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1883528	1.00[JPT][hapmap]
rs1888997	1.00[JPT][hapmap]
rs1888999	1.00[JPT][hapmap]
rs2103661	0.85[JPT][hapmap]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2258617	1.00[JPT][hapmap]
rs2258719	1.00[JPT][hapmap]
rs2258728	1.00[JPT][hapmap]
rs2258769	1.00[JPT][hapmap]
rs2259837	1.00[JPT][hapmap]
rs2297496	1.00[JPT][hapmap]
rs2297497	1.00[JPT][hapmap]
rs2387881	1.00[JPT][hapmap]
rs2387977	0.82[JPT][hapmap]
rs2388026	0.89[EUR][1000 genomes]
rs242133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2424719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2482911	1.00[JPT][hapmap]
rs2482918	1.00[JPT][hapmap]
rs2482923	1.00[JPT][hapmap]
rs2482927	1.00[JPT][hapmap]
rs2482931	1.00[JPT][hapmap]
rs2482943	1.00[JPT][hapmap]
rs2500399	1.00[JPT][hapmap]
rs2500405	1.00[JPT][hapmap]
rs2500406	1.00[JPT][hapmap]
rs2500424	1.00[JPT][hapmap]
rs2500432	1.00[JPT][hapmap]
rs2500433	1.00[JPT][hapmap]
rs2500436	1.00[JPT][hapmap]
rs2500446	1.00[JPT][hapmap]
rs2856	1.00[JPT][hapmap]
rs35666277	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3761117	1.00[JPT][hapmap]
rs3764695	0.89[EUR][1000 genomes]
rs397119	1.00[JPT][hapmap]
rs398036	1.00[JPT][hapmap]
rs400070	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs409322	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs409401	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs417110	1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs428278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs431579	1.00[JPT][hapmap]
rs433352	1.00[JPT][hapmap]
rs437635	1.00[JPT][hapmap]
rs440612	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs442834	1.00[JPT][hapmap]
rs446649	1.00[JPT][hapmap]
rs447808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs449370	1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4813562	1.00[JPT][hapmap]
rs4813570	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4815411	1.00[JPT][hapmap]
rs4815412	1.00[JPT][hapmap]
rs4815417	1.00[JPT][hapmap]
rs4815436	1.00[JPT][hapmap]
rs57638633	0.89[EUR][1000 genomes]
rs58184048	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58877578	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59324912	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59546510	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037095	1.00[JPT][hapmap]
rs6037097	1.00[JPT][hapmap]
rs6037103	1.00[JPT][hapmap]
rs6037105	1.00[JPT][hapmap]
rs6037128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037133	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6037164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037166	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037167	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037179	0.89[EUR][1000 genomes]
rs6037180	0.89[EUR][1000 genomes]
rs6037192	0.82[EUR][1000 genomes]
rs6037193	0.85[EUR][1000 genomes]
rs6037195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs6037196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037198	0.89[EUR][1000 genomes]
rs6037199	0.89[EUR][1000 genomes]
rs6037205	0.80[EUR][1000 genomes]
rs6037208	0.89[EUR][1000 genomes]
rs6050532	1.00[JPT][hapmap]
rs6050544	0.86[JPT][hapmap]
rs6050559	1.00[JPT][hapmap]
rs6050561	1.00[JPT][hapmap]
rs6050565	1.00[JPT][hapmap]
rs6050567	1.00[JPT][hapmap]
rs6050573	1.00[JPT][hapmap]
rs6050590	1.00[JPT][hapmap]
rs6050594	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050597	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050598	1.00[JPT][hapmap]
rs6050599	1.00[JPT][hapmap]
rs6050611	1.00[JPT][hapmap]
rs6050626	1.00[JPT][hapmap]
rs6050651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050692	0.84[EUR][1000 genomes]
rs6050709	0.82[EUR][1000 genomes]
rs6050710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6050712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6050714	0.84[EUR][1000 genomes]
rs6050717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6050724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050726	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050758	0.89[EUR][1000 genomes]
rs6050763	0.89[EUR][1000 genomes]
rs6050765	0.89[EUR][1000 genomes]
rs6050767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs6050768	0.84[EUR][1000 genomes]
rs6050770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs6050775	0.89[EUR][1000 genomes]
rs6050779	1.00[JPT][hapmap]
rs6050787	0.89[EUR][1000 genomes]
rs6050788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs6050789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs6050791	1.00[JPT][hapmap]
rs6050793	0.89[EUR][1000 genomes]
rs6050795	0.89[EUR][1000 genomes]
rs6050799	0.89[EUR][1000 genomes]
rs6050802	0.89[EUR][1000 genomes]
rs6050804	0.89[EUR][1000 genomes]
rs6050807	0.89[EUR][1000 genomes]
rs6050809	0.89[EUR][1000 genomes]
rs6050815	0.89[EUR][1000 genomes]
rs6076336	1.00[JPT][hapmap]
rs6083804	1.00[JPT][hapmap]
rs6083805	1.00[JPT][hapmap]
rs6083809	1.00[JPT][hapmap]
rs6083818	1.00[JPT][hapmap]
rs6083828	1.00[JPT][hapmap]
rs6083853	1.00[JPT][hapmap]
rs6083862	0.86[JPT][hapmap]
rs6083886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6083896	1.00[JPT][hapmap]
rs6083897	0.86[JPT][hapmap]
rs6083899	1.00[JPT][hapmap]
rs6107031	1.00[JPT][hapmap]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115140	1.00[JPT][hapmap]
rs6115159	1.00[JPT][hapmap]
rs6115191	1.00[JPT][hapmap]
rs6115200	1.00[JPT][hapmap]
rs6115214	1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115224	1.00[JPT][hapmap]
rs6115232	1.00[JPT][hapmap]
rs6132848	1.00[JPT][hapmap]
rs6132850	1.00[JPT][hapmap]
rs6138572	1.00[JPT][hapmap]
rs6138575	1.00[JPT][hapmap]
rs6138588	1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138612	1.00[JPT][hapmap]
rs66467007	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66501707	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66591653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66673357	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66927803	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66940055	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67069812	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67359112	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67455519	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67482703	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67679582	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67680401	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67921634	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68149491	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68165049	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7020	1.00[JPT][hapmap]
rs7260843	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7261537	0.84[EUR][1000 genomes]
rs7261902	0.84[EUR][1000 genomes]
rs7262450	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7266130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7266592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7267979	1.00[JPT][hapmap]
rs7270835	1.00[JPT][hapmap]
rs7273525	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7274550	0.88[EUR][1000 genomes]
rs73331863	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73331878	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73333512	0.82[ASN][1000 genomes]
rs73333513	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337339	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73337343	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73337346	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73337349	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73337355	0.88[EUR][1000 genomes]
rs73337356	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73337364	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73337366	0.88[EUR][1000 genomes]
rs73337369	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73337372	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73337394	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73337401	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73339323	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73339335	0.86[EUR][1000 genomes]
rs73339360	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73339379	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73339383	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73339387	0.84[AMR][1000 genomes]
rs73341361	0.89[EUR][1000 genomes]
rs73341397	0.85[EUR][1000 genomes]
rs73343217	0.89[EUR][1000 genomes]
rs73343255	0.89[EUR][1000 genomes]
rs73597810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597811	0.94[ASN][1000 genomes]
rs73597812	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73597813	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73614590	0.84[EUR][1000 genomes]
rs73614591	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73614594	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs742435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs742436	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs761025	1.00[JPT][hapmap]
rs8115484	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8115742	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8117181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8117253	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8120065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8120594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs8120972	0.88[EUR][1000 genomes]
rs8126111	0.88[EUR][1000 genomes]
rs84816	1.00[JPT][hapmap]
rs926486	1.00[JPT][hapmap]
rs926487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs928121	1.00[JPT][hapmap]
rs981440	0.89[EUR][1000 genomes]
rs981441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs9927	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv482647	chr20:25308912-25481982	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1056997	chr20:25316663-25492339	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv912828	chr20:25433015-25595175	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1062452	chr20:25438025-25590278	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv1066066	chr20:25439367-25588016	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv544224	chr20:25439367-25588016	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv912829	chr20:25444242-25595175	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv912830	chr20:25449945-25595175	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv912831	chr20:25449945-25595868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv994976	chr20:25466406-25593286	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	nsv534623	chr20:25466406-25593296	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv1062765	chr20:25466482-25556751	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv544225	chr20:25466482-25556751	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs16987786	ZNF337	cis	Adipose Subcutaneous	GTEx
rs16987786	NINL	cis	Nerve Tibial	GTEx
rs16987786	ZNF337	cis	Thyroid	GTEx
rs16987786	ZNF337	cis	lung	GTEx
rs16987786	ZNF337	cis	Whole Blood	GTEx
rs16987786	RP4-694B14.5	cis	Whole Blood	GTEx
rs16987786	RP4-694B14.5	cis	lung	GTEx
rs16987786	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs16987786	ZNF337	cis	Stomach	GTEx
rs16987786	RP4-694B14.5	cis	Thyroid	GTEx
rs16987786	RP4-694B14.5	cis	Stomach	GTEx

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25427200-25488200	Weak transcription	Stomach Mucosa	stomach
2	chr20:25430200-25484400	Strong transcription	Fetal Stomach	stomach
3	chr20:25431800-25484200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr20:25446000-25489600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr20:25446400-25488200	Weak transcription	Right Atrium	heart
6	chr20:25447000-25477600	Strong transcription	Fetal Muscle Leg	muscle
7	chr20:25448200-25490600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr20:25448600-25484200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr20:25448800-25480800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr20:25451400-25488800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr20:25453400-25494400	Strong transcription	Brain Germinal Matrix	brain
12	chr20:25457800-25489000	Weak transcription	Placenta	Placenta
13	chr20:25459800-25489800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr20:25462800-25474800	Weak transcription	Right Ventricle	heart
15	chr20:25462800-25488200	Weak transcription	Colonic Mucosa	Colon
16	chr20:25464000-25474600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:25464200-25474400	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr20:25465000-25483000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr20:25465400-25481600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr20:25465600-25490000	Weak transcription	Brain Angular Gyrus	brain
21	chr20:25465800-25488000	Weak transcription	Fetal Kidney	kidney
22	chr20:25466000-25484200	Weak transcription	Fetal Brain Male	brain
23	chr20:25466200-25477400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr20:25467400-25484200	Weak transcription	Left Ventricle	heart
25	chr20:25467400-25491800	Weak transcription	Primary T cells from cord blood	blood
26	chr20:25467600-25488000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr20:25467800-25476400	Strong transcription	A549	lung
28	chr20:25468600-25484200	Weak transcription	HUVEC	blood vessel
29	chr20:25469000-25477400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr20:25469800-25477400	Weak transcription	HSMMtube	muscle
31	chr20:25469800-25484200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr20:25470000-25475800	Weak transcription	Brain Substantia Nigra	brain
33	chr20:25470000-25477400	Weak transcription	Colon Smooth Muscle	Colon
34	chr20:25470000-25483000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr20:25470000-25488000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr20:25470000-25488000	Weak transcription	Osteobl	bone
37	chr20:25470200-25475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr20:25470200-25484200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr20:25470600-25477400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr20:25470600-25484200	Weak transcription	NHLF	lung
41	chr20:25470800-25480800	Weak transcription	Fetal Lung	lung
42	chr20:25470800-25484200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr20:25470800-25484400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr20:25471000-25475800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr20:25471000-25488200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr20:25471400-25482400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr20:25471400-25483000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr20:25471600-25475000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr20:25471800-25476000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr20:25472000-25475000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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