Variant report

Variant rs73597813
Chromosome Location chr20:25513223-25513224
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25495800-25519400 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr20:25497400-25514800 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr20:25498200-25514600 Weak transcription Pancreas Pancrea
4 chr20:25498200-25519000 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr20:25498200-25519400 Weak transcription Gastric stomach
6 chr20:25498200-25532200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr20:25498400-25519200 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr20:25502600-25519800 Weak transcription Stomach Mucosa stomach
9 chr20:25505200-25513800 Weak transcription Fetal Kidney kidney
10 chr20:25505400-25514600 Weak transcription Lung lung
11 chr20:25505400-25521000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr20:25507200-25513400 Weak transcription Fetal Lung lung
13 chr20:25507400-25518400 Weak transcription A549 lung
14 chr20:25507600-25513400 Weak transcription Liver Liver
15 chr20:25507600-25513600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr20:25507600-25513600 Weak transcription NHLF lung
17 chr20:25507600-25518000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr20:25507600-25519600 Weak transcription Fetal Intestine Large intestine
19 chr20:25507800-25516800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr20:25511200-25517600 Weak transcription Fetal Brain Female brain
21 chr20:25511200-25520200 Weak transcription Fetal Brain Male brain
22 chr20:25511600-25513400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr20:25512000-25516000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
24 chr20:25512200-25514000 ZNF genes & repeats Dnd41 blood
25 chr20:25512200-25515400 Enhancers Fetal Adrenal Gland Adrenal Gland
26 chr20:25512200-25515800 Enhancers HUES48 Cell Line embryonic stem cell
27 chr20:25512400-25514200 Enhancers Brain Angular Gyrus brain
28 chr20:25512400-25514200 Enhancers Fetal Muscle Trunk muscle
29 chr20:25512400-25514400 Flanking Active TSS Brain Cingulate Gyrus brain
30 chr20:25512400-25515000 Enhancers H1 Cell Line embryonic stem cell
31 chr20:25512400-25515600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr20:25512400-25516000 Enhancers iPS-18 Cell Line embryonic stem cell
33 chr20:25512400-25516000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
34 chr20:25512600-25513400 Weak transcription Thymus Thymus
35 chr20:25512600-25513600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
36 chr20:25512600-25513800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr20:25512600-25513800 Enhancers Ovary ovary
38 chr20:25512600-25515000 Enhancers Fetal Muscle Leg muscle
39 chr20:25512600-25515200 Enhancers Right Ventricle heart
40 chr20:25512600-25515800 Enhancers Fetal Heart heart
41 chr20:25512800-25513400 Active TSS Aorta Aorta
42 chr20:25512800-25513600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr20:25512800-25513600 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
44 chr20:25512800-25513600 Enhancers Esophagus oesophagus
45 chr20:25512800-25513600 Enhancers HMEC breast
46 chr20:25512800-25513800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr20:25512800-25514000 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
48 chr20:25512800-25514000 Enhancers Colon Smooth Muscle Colon
49 chr20:25512800-25514200 Flanking Active TSS Brain Anterior Caudate brain
50 chr20:25512800-25514400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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