Variant report

Variant	rs7266592
Chromosome Location	chr20:25561784-25561785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:25555296..25557019-chr20:25561500..25564069,2	MCF-7	breast:
2	chr20:25560435..25563283-chr20:25564652..25566367,3	MCF-7	breast:
3	chr20:25560873..25562976-chr20:25579297..25581436,2	MCF-7	breast:
4	chr20:25559789..25563161-chr20:25564263..25567245,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101004	Chromatin interaction

Extended variants
information (count: 273 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:257)

rs_ID	r²[population]
rs1047171	1.00[JPT][hapmap]
rs10485776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1076690	0.80[AMR][1000 genomes]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1122769	1.00[JPT][hapmap]
rs11699203	1.00[JPT][hapmap]
rs12106173	1.00[JPT][hapmap]
rs12428	1.00[JPT][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16987767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs16987786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16987789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16987799	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16987820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16987934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16988014	1.00[JPT][hapmap]
rs1883528	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1891771	0.83[EUR][1000 genomes]
rs1936188	0.85[EUR][1000 genomes]
rs1936190	0.83[EUR][1000 genomes]
rs2006249	0.81[ASN][1000 genomes]
rs2103661	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2387881	1.00[JPT][hapmap]
rs2387977	0.82[JPT][hapmap]
rs242133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2424719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2482911	1.00[JPT][hapmap]
rs2482918	1.00[JPT][hapmap]
rs2482943	1.00[JPT][hapmap]
rs2500406	1.00[JPT][hapmap]
rs2500424	1.00[JPT][hapmap]
rs2500436	1.00[JPT][hapmap]
rs2856	1.00[JPT][hapmap]
rs2892408	0.94[ASN][1000 genomes]
rs35516971	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35666277	0.92[EUR][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3761117	1.00[JPT][hapmap]
rs3813916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs397119	1.00[JPT][hapmap]
rs398036	1.00[JPT][hapmap]
rs400070	0.86[EUR][1000 genomes]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs409322	0.80[EUR][1000 genomes]
rs409401	0.84[EUR][1000 genomes]
rs41308623	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs417110	1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs428278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs431579	1.00[JPT][hapmap]
rs4318454	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs433352	1.00[JPT][hapmap]
rs4368405	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs437635	1.00[JPT][hapmap]
rs440612	0.86[EUR][1000 genomes]
rs442834	1.00[JPT][hapmap]
rs446649	1.00[JPT][hapmap]
rs447808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs449370	1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4813570	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4815417	1.00[JPT][hapmap]
rs4815436	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4815445	1.00[JPT][hapmap]
rs58184048	0.92[EUR][1000 genomes]
rs58877578	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59324912	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59399848	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59546510	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6037103	1.00[JPT][hapmap]
rs6037105	1.00[JPT][hapmap]
rs6037128	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6037131	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6037133	1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6037167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037168	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037195	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6037196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6037199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6037204	0.82[EUR][1000 genomes]
rs6037206	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6037222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6037223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs60394570	0.83[ASN][1000 genomes]
rs60463280	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050573	1.00[JPT][hapmap]
rs6050590	1.00[JPT][hapmap]
rs6050594	0.92[EUR][1000 genomes]
rs6050597	0.92[EUR][1000 genomes]
rs6050598	1.00[JPT][hapmap]
rs6050599	1.00[JPT][hapmap]
rs6050611	1.00[JPT][hapmap]
rs6050626	1.00[JPT][hapmap]
rs6050651	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6050658	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050692	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050707	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050709	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050714	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050720	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050723	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050727	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050729	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050730	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6050733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050737	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050743	0.85[EUR][1000 genomes]
rs6050745	0.85[EUR][1000 genomes]
rs6050749	0.85[EUR][1000 genomes]
rs6050753	0.83[EUR][1000 genomes]
rs6050754	0.83[EUR][1000 genomes]
rs6050755	0.80[EUR][1000 genomes]
rs6050756	0.83[EUR][1000 genomes]
rs6050767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050779	1.00[JPT][hapmap]
rs6050788	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050789	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050791	1.00[JPT][hapmap]
rs6050796	1.00[JPT][hapmap]
rs6050799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050801	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050805	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6050807	0.82[ASN][1000 genomes]
rs6050858	1.00[JPT][hapmap]
rs6050867	1.00[JPT][hapmap]
rs6076372	0.88[ASN][1000 genomes]
rs6083828	1.00[JPT][hapmap]
rs6083853	1.00[JPT][hapmap]
rs6083862	0.86[JPT][hapmap]
rs6083886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083896	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6083897	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6083899	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs60897995	0.87[EUR][1000 genomes]
rs61052177	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115191	1.00[JPT][hapmap]
rs6115200	1.00[JPT][hapmap]
rs6115214	1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115220	0.94[ASN][1000 genomes]
rs6115224	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6115232	1.00[JPT][hapmap]
rs6132848	1.00[JPT][hapmap]
rs6132850	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6138572	1.00[JPT][hapmap]
rs6138575	1.00[JPT][hapmap]
rs6138588	1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138608	0.89[ASN][1000 genomes]
rs6138612	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6138613	0.85[ASN][1000 genomes]
rs61494938	0.87[EUR][1000 genomes]
rs66467007	0.97[EUR][1000 genomes]
rs66591653	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66673357	0.92[EUR][1000 genomes]
rs66813885	0.83[EUR][1000 genomes]
rs66927803	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66940055	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66983770	0.83[EUR][1000 genomes]
rs67359112	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67455519	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67482703	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67679582	0.95[EUR][1000 genomes]
rs67680401	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67921634	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68149491	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68165049	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7260843	0.92[EUR][1000 genomes]
rs7261537	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7261902	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7262450	0.92[EUR][1000 genomes]
rs7266130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7270835	1.00[JPT][hapmap]
rs7274550	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73331863	0.92[EUR][1000 genomes]
rs73331878	0.92[EUR][1000 genomes]
rs73333512	0.87[EUR][1000 genomes]
rs73333513	0.92[EUR][1000 genomes]
rs73337339	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337343	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337346	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337349	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73337355	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337356	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337364	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337366	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337369	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337372	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337394	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73339323	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73339335	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73339360	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73339379	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73339383	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73339387	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73341305	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73341314	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73341328	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73341363	0.82[ASN][1000 genomes]
rs73341365	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73343275	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73343292	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73345249	0.87[EUR][1000 genomes]
rs73345264	0.85[EUR][1000 genomes]
rs73345278	0.83[EUR][1000 genomes]
rs73345286	0.83[EUR][1000 genomes]
rs7346687	0.81[EUR][1000 genomes]
rs73597810	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73597811	0.82[ASN][1000 genomes]
rs73597812	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73597813	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73614594	0.92[EUR][1000 genomes]
rs742435	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs742436	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs761025	1.00[JPT][hapmap]
rs8115484	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8115742	1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8116267	1.00[JPT][hapmap]
rs8117181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8117253	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8120065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8120594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8120972	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121013	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8121648	1.00[JPT][hapmap]
rs8125002	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8126111	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8126236	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs84816	1.00[JPT][hapmap]
rs926486	1.00[JPT][hapmap]
rs926487	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs928121	1.00[JPT][hapmap]
rs981441	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv912828	chr20:25433015-25595175	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1062452	chr20:25438025-25590278	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1066066	chr20:25439367-25588016	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv544224	chr20:25439367-25588016	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv912829	chr20:25444242-25595175	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv912830	chr20:25449945-25595175	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv912831	chr20:25449945-25595868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv994976	chr20:25466406-25593286	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv534623	chr20:25466406-25593296	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv912832	chr20:25527984-25595175	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
16	nsv912833	chr20:25539486-25595175	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7266592	ZNF337	cis	Stomach	GTEx
rs7266592	RP4-694B14.5	cis	lung	GTEx
rs7266592	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx
rs7266592	ZNF337	cis	Thyroid	GTEx
rs7266592	RP4-694B14.5	cis	Thyroid	GTEx
rs7266592	ZNF337	cis	Adipose Subcutaneous	GTEx
rs7266592	RP4-694B14.5	cis	Stomach	GTEx
rs7266592	ZNF337	cis	lung	GTEx
rs7266592	NINL	cis	Nerve Tibial	GTEx

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25521600-25565000	Weak transcription	Aorta	Aorta
2	chr20:25524400-25565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:25532600-25565000	Weak transcription	HSMMtube	muscle
4	chr20:25535800-25565000	Weak transcription	Fetal Kidney	kidney
5	chr20:25544600-25565000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr20:25546400-25565000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr20:25548800-25565200	Weak transcription	Esophagus	oesophagus
8	chr20:25552000-25565000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr20:25552200-25564800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr20:25555200-25564800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:25555200-25565000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr20:25555200-25565000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr20:25555400-25565000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr20:25555400-25565000	Weak transcription	Brain Anterior Caudate	brain
15	chr20:25555400-25565000	Weak transcription	NHLF	lung
16	chr20:25557000-25565000	Weak transcription	Thymus	Thymus
17	chr20:25558200-25565200	Weak transcription	Spleen	Spleen
18	chr20:25559000-25562000	Enhancers	Fetal Heart	heart
19	chr20:25559600-25561800	Genic enhancers	A549	lung
20	chr20:25560200-25565000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr20:25560400-25564000	Weak transcription	Fetal Brain Male	brain
22	chr20:25560400-25564600	Weak transcription	Brain Germinal Matrix	brain
23	chr20:25560400-25564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr20:25560400-25564800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr20:25560400-25564800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr20:25560400-25564800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr20:25560400-25564800	Weak transcription	NH-A	brain
28	chr20:25560400-25565000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr20:25560400-25565000	Weak transcription	Osteobl	bone
30	chr20:25560400-25565200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr20:25560400-25565200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr20:25560600-25561800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr20:25560600-25562600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr20:25560600-25562600	Genic enhancers	HepG2	liver
35	chr20:25560600-25562800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr20:25560600-25565000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr20:25560600-25565000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr20:25560600-25565000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr20:25560600-25565000	Weak transcription	Fetal Thymus	thymus
40	chr20:25560600-25565200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr20:25560800-25561800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr20:25560800-25565000	Weak transcription	Fetal Intestine Small	intestine
43	chr20:25561000-25561800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr20:25561000-25561800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr20:25561000-25561800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr20:25561000-25561800	Enhancers	Placenta	Placenta
47	chr20:25561000-25561800	Genic enhancers	Dnd41	blood
48	chr20:25561000-25561800	Enhancers	HMEC	breast
49	chr20:25561000-25562000	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr20:25561200-25561800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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