Variant report

Variant	rs6037164
Chromosome Location	chr20:25605550-25605551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:25603585-25605618	HepG2	liver:	n/a	n/a
2	MAX	chr20:25603644-25605557	MCF-7	breast:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
3	MAX	chr20:25603608-25605603	HepG2	liver:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
4	POLR2A	chr20:25604219-25605593	K562	blood:	n/a	n/a
5	POLR2A	chr20:25603578-25605642	HUVEC	blood vessel:	n/a	n/a
6	MAX	chr20:25603516-25605564	A549	lung:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
7	GATA3	chr20:25603629-25605622	A549	lung:	n/a	chr20:25603740-25603747
8	POLR2A	chr20:25603771-25605572	PANC-1	pancreas:	n/a	n/a
9	E2F6	chr20:25603590-25605668	H1-hESC	embryonic stem cell:	n/a	chr20:25604629-25604638 chr20:25605119-25605134 chr20:25604394-25604404 chr20:25605116-25605128
10	POLR2A	chr20:25604050-25605558	GM12878	blood:	n/a	n/a
11	MAX	chr20:25602731-25605564	A549	lung:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
12	MXI1	chr20:25603212-25605606	IMR90	lung:	n/a	n/a
13	POLR2A	chr20:25603220-25605649	K562	blood:	n/a	n/a
14	SIN3AK20	chr20:25603245-25605615	MCF-7	breast:	n/a	n/a
15	MAX	chr20:25603695-25605586	H1-hESC	embryonic stem cell:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
16	POLR2A	chr20:25603646-25605564	K562	blood:	n/a	n/a
17	MBD4	chr20:25603412-25605623	HepG2	liver:	n/a	n/a
18	MAX	chr20:25603460-25605592	HepG2	liver:	n/a	chr20:25603913-25603922 chr20:25603913-25603922
19	MYBL2	chr20:25603264-25605585	HepG2	liver:	n/a	n/a
20	HEY1	chr20:25603355-25605572	HepG2	liver:	n/a	chr20:25604347-25604362
21	POLR2A	chr20:25603588-25605587	PFSK-1	brain:	n/a	n/a
22	POLR2A	chr20:25604206-25605564	GM12891	blood:	n/a	n/a
23	REST	chr20:25603895-25605596	A549	lung:	n/a	chr20:25604195-25604208 chr20:25605168-25605181 chr20:25604617-25604630 chr20:25605181-25605189
24	POLR2A	chr20:25604057-25605558	PANC-1	pancreas:	n/a	n/a
25	POLR2A	chr20:25603912-25606817	MCF10A-Er-Src	breast:	n/a	n/a
26	POLR2A	chr20:25603735-25605568	HepG2	liver:	n/a	n/a
27	POLR2A	chr20:25603845-25607875	MCF10A-Er-Src	breast:	n/a	n/a
28	CREB1	chr20:25603560-25605592	HepG2	liver:	n/a	n/a
29	MTA3	chr20:25603553-25605554	GM12878	blood:	n/a	n/a
30	POLR2A	chr20:25603517-25605692	SK-N-MC	brain:	n/a	n/a
31	POLR2A	chr20:25603830-25605605	PFSK-1	brain:	n/a	n/a
32	POLR2A	chr20:25603770-25605587	GM12892	blood:	n/a	n/a
33	POLR2A	chr20:25603685-25605550	GM12892	blood:	n/a	n/a
34	POLR2A	chr20:25603784-25605552	MCF-7	breast:	n/a	n/a
35	POLR2A	chr20:25602582-25605593	HepG2	liver:	n/a	n/a
36	E2F6	chr20:25603565-25605625	A549	lung:	n/a	chr20:25604629-25604638 chr20:25605119-25605134 chr20:25604394-25604404 chr20:25605116-25605128
37	TCF12	chr20:25602972-25605622	A549	lung:	n/a	n/a
38	MBD4	chr20:25603822-25605567	HepG2	liver:	n/a	n/a
39	POLR2A	chr20:25603719-25605578	GM12878	blood:	n/a	n/a
40	POLR2A	chr20:25603771-25605586	GM12891	blood:	n/a	n/a
41	HEY1	chr20:25603681-25605597	HepG2	liver:	n/a	chr20:25604347-25604362
42	POLR2A	chr20:25602890-25606578	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr20:25563758..25567670-chr20:25600746..25606260,10	MCF-7	breast:
2	chr20:25604862..25606415-chr20:25633775..25635785,2	MCF-7	breast:
3	chr20:25590781..25592605-chr20:25602144..25606440,3	MCF-7	breast:
4	chr20:25603699..25606216-chr20:25676779..25679090,3	MCF-7	breast:
5	chr20:25564265..25567754-chr20:25602950..25606854,10	MCF-7	breast:
6	chr20:25474956..25477524-chr20:25604184..25606432,2	MCF-7	breast:
7	chr20:25601566..25607773-chr20:25608657..25615631,12	MCF-7	breast:
8	chr20:25604068..25607059-chr20:25675582..25678596,4	MCF-7	breast:
9	chr20:25571499..25573188-chr20:25604906..25607655,2	K562	blood:
10	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:
11	chr20:25475529..25477645-chr20:25603569..25606189,3	MCF-7	breast:
12	chr20:25604700..25606724-chr20:25650561..25652560,2	MCF-7	breast:
13	chr20:25604858..25606778-chr20:25612734..25614672,2	MCF-7	breast:
14	chr20:25591410..25597359-chr20:25600309..25606040,12	K562	blood:
15	chr20:25603625..25606406-chr20:25665177..25670447,5	MCF-7	breast:
16	chr20:25602965..25606226-chr20:25676160..25678613,3	K562	blood:

Variant related genes	Relation type
NANP	TF binding region
ENSG00000251883	Chromatin interaction
ENSG00000130684	Chromatin interaction
ENSG00000213742	Chromatin interaction
ENSG00000242236	Chromatin interaction
ENSG00000236542	Chromatin interaction
ENSG00000101004	Chromatin interaction

Extended variants
information (count: 286 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:282)

rs_ID	r²[population]
rs1047171	1.00[JPT][hapmap]
rs10485776	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11087521	1.00[JPT][hapmap]
rs1109100	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1122769	1.00[JPT][hapmap]
rs11699203	1.00[JPT][hapmap]
rs12106173	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12428	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1569617	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16987767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs16987786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987789	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987799	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs16987820	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16987934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16988014	1.00[JPT][hapmap]
rs1883528	1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1891771	0.90[EUR][1000 genomes]
rs1936188	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1936190	0.90[EUR][1000 genomes]
rs2006249	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2103661	0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2151144	1.00[JPT][hapmap]
rs2179458	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2387977	0.82[JPT][hapmap]
rs2388026	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs242130	0.90[CHD][hapmap];0.94[ASN][1000 genomes]
rs242133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2424719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2482918	1.00[JPT][hapmap]
rs2500436	1.00[JPT][hapmap]
rs2856	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2892408	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35516971	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35666277	0.85[EUR][1000 genomes]
rs372678	1.00[JPT][hapmap]
rs3764695	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3813916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs397119	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs398036	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs400070	1.00[CHB][hapmap]
rs401166	1.00[JPT][hapmap]
rs402120	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.82[EUR][1000 genomes]
rs409401	0.82[EUR][1000 genomes]
rs4098823	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4098824	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4113658	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4113659	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4113661	0.81[ASN][1000 genomes]
rs4113662	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41308623	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417110	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs417130	1.00[JPT][hapmap]
rs422844	1.00[JPT][hapmap]
rs424487	1.00[JPT][hapmap]
rs426563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[EUR][1000 genomes]
rs428278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs431579	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4318454	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs433352	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4343537	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4368405	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs437635	1.00[JPT][hapmap]
rs442834	1.00[JPT][hapmap]
rs446649	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs447808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs449370	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs449703	1.00[JPT][hapmap]
rs454723	1.00[JPT][hapmap]
rs4574179	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4813579	0.81[ASN][1000 genomes]
rs4815436	0.94[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4815445	1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4815450	0.81[ASN][1000 genomes]
rs57638633	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58169034	0.82[EUR][1000 genomes]
rs58184048	0.85[EUR][1000 genomes]
rs58877578	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59399848	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037128	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs6037131	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs6037133	1.00[JPT][hapmap]
rs6037159	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037166	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6037167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037168	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037169	0.84[ASN][1000 genomes]
rs6037179	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037180	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037192	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6037193	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037195	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6037198	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037199	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037204	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6037205	0.82[ASN][1000 genomes]
rs6037206	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6037208	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037212	0.94[ASN][1000 genomes]
rs6037217	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6037220	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6037222	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6037223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60394570	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs60463280	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050611	1.00[JPT][hapmap]
rs6050626	1.00[JPT][hapmap]
rs6050663	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050692	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050707	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050709	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050710	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050714	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050727	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050729	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050730	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050732	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050737	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050743	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050745	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050749	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050751	0.81[AFR][1000 genomes]
rs6050753	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050754	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050755	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050756	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050758	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050763	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6050765	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050768	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6050770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050775	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050779	1.00[JPT][hapmap]
rs6050787	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050788	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050789	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050791	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6050793	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050795	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050796	0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6050799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050801	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050802	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050804	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050805	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6050807	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6050809	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050815	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6050825	0.81[ASN][1000 genomes]
rs6050832	0.94[ASN][1000 genomes]
rs6050833	0.81[ASN][1000 genomes]
rs6050834	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050835	0.94[ASN][1000 genomes]
rs6050838	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050840	0.81[ASN][1000 genomes]
rs6050841	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050846	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050847	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050848	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050851	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050853	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050854	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6050858	1.00[JPT][hapmap]
rs6050867	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs6076372	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083862	0.86[JPT][hapmap]
rs6083886	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083896	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083897	0.94[ASW][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083899	1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6083902	0.85[AFR][1000 genomes]
rs60897995	0.95[EUR][1000 genomes]
rs61052177	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6107045	1.00[JPT][hapmap]
rs6107047	1.00[JPT][hapmap]
rs6115191	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6115200	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6115214	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6115215	1.00[JPT][hapmap]
rs6115220	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6115224	1.00[ASW][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6115232	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6132848	1.00[JPT][hapmap]
rs6132850	0.94[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6138572	1.00[JPT][hapmap]
rs6138575	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6138588	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs6138600	1.00[JPT][hapmap]
rs6138608	0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6138612	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6138613	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61494938	0.95[EUR][1000 genomes]
rs66467007	0.90[EUR][1000 genomes]
rs66673357	0.85[EUR][1000 genomes]
rs66813885	0.90[EUR][1000 genomes]
rs66927803	0.90[EUR][1000 genomes]
rs66940055	0.90[EUR][1000 genomes]
rs66983770	0.90[EUR][1000 genomes]
rs67679582	0.88[EUR][1000 genomes]
rs67680401	0.90[EUR][1000 genomes]
rs68149491	0.90[EUR][1000 genomes]
rs7260843	0.85[EUR][1000 genomes]
rs7261537	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7261902	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7266130	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7266592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7269064	0.83[EUR][1000 genomes]
rs7270835	1.00[JPT][hapmap]
rs7274550	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337339	0.90[EUR][1000 genomes]
rs73337343	0.90[EUR][1000 genomes]
rs73337346	0.90[EUR][1000 genomes]
rs73337349	0.90[EUR][1000 genomes]
rs73337355	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337356	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337364	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337366	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337369	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337372	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337394	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337401	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339323	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339335	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73339360	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73339379	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73339383	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73339387	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341305	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341314	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341328	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341361	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73341363	0.91[ASN][1000 genomes]
rs73341365	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73341397	0.94[ASN][1000 genomes]
rs73343217	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73343255	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73343275	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73343292	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73345232	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73345249	0.95[EUR][1000 genomes]
rs73345259	0.82[EUR][1000 genomes]
rs73345264	0.93[EUR][1000 genomes]
rs73345278	0.90[EUR][1000 genomes]
rs73345286	0.90[EUR][1000 genomes]
rs7346687	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73597829	0.91[AMR][1000 genomes]
rs742435	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs761025	1.00[JPT][hapmap]
rs8115484	0.90[EUR][1000 genomes]
rs8115742	1.00[JPT][hapmap]
rs8116267	1.00[JPT][hapmap]
rs8116474	0.84[EUR][1000 genomes]
rs8117181	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8117253	0.90[EUR][1000 genomes]
rs8120065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120594	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120972	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8121013	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121648	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs8122516	0.84[EUR][1000 genomes]
rs8125002	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8126111	0.90[EUR][1000 genomes]
rs8126236	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs84816	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs926486	1.00[JPT][hapmap]
rs926487	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs928121	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9753575	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs981440	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs981441	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9941769	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6037164	ZNF337	cis	lung	GTEx
rs6037164	ZNF337	cis	Thyroid	GTEx
rs6037164	RP4-694B14.5	cis	Thyroid	GTEx
rs6037164	RP4-694B14.5	cis	lung	GTEx
rs6037164	ZNF337	cis	Adipose Subcutaneous	GTEx
rs6037164	RP4-694B14.5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25603000-25606000	Active TSS	K562	blood
2	chr20:25603200-25605600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr20:25603200-25605600	Active TSS	Fetal Intestine Small	intestine
4	chr20:25603200-25605800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:25603400-25605600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr20:25603400-25605600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr20:25603400-25605600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr20:25603400-25605600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr20:25603400-25605600	Active TSS	Fetal Lung	lung
10	chr20:25603400-25605600	Active TSS	HSMM	muscle
11	chr20:25603400-25606600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:25603600-25605600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr20:25603600-25605600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr20:25603600-25605600	Active TSS	Colon Smooth Muscle	Colon
15	chr20:25603600-25605600	Active TSS	Fetal Kidney	kidney
16	chr20:25603600-25605600	Active TSS	Rectal Smooth Muscle	rectum
17	chr20:25603600-25605600	Active TSS	Osteobl	bone
18	chr20:25603600-25605800	Active TSS	Hela-S3	cervix
19	chr20:25603600-25606200	Active TSS	A549	lung
20	chr20:25603800-25605600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr20:25603800-25605600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr20:25603800-25605600	Active TSS	Brain Hippocampus Middle	brain
23	chr20:25603800-25605600	Active TSS	Brain Substantia Nigra	brain
24	chr20:25603800-25605600	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr20:25603800-25605600	Active TSS	Thymus	Thymus
26	chr20:25604000-25605600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr20:25604000-25605600	Active TSS	Fetal Brain Female	brain
28	chr20:25604000-25605800	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr20:25604200-25605600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr20:25604200-25605600	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr20:25604200-25605600	Active TSS	Primary T cells from cord blood	blood
32	chr20:25604200-25605600	Active TSS	Colonic Mucosa	Colon
33	chr20:25604600-25605800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr20:25604800-25605600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr20:25604800-25605600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr20:25604800-25605600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr20:25604800-25605600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr20:25604800-25605600	Flanking Active TSS	Pancreas	Pancrea
39	chr20:25604800-25605600	Flanking Active TSS	Right Ventricle	heart
40	chr20:25605000-25605600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr20:25605000-25605600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr20:25605000-25605600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
43	chr20:25605000-25605600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr20:25605000-25605600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr20:25605000-25605600	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr20:25605000-25605600	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr20:25605000-25605600	Flanking Active TSS	Fetal Muscle Trunk	muscle
48	chr20:25605000-25605600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr20:25605000-25605600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr20:25605000-25605600	Active TSS	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

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