The 2.0 version of rSNPBase

Variant report

Variant rs6050840
Chromosome Location chr20:25701220-25701221
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25694200-25705400 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr20:25699200-25701400 Enhancers Primary T cells fromperipheralblood blood
3 chr20:25699200-25701400 Enhancers Primary T helper cells fromperipheralblood blood
4 chr20:25699200-25701400 Weak transcription Brain Hippocampus Middle brain
5 chr20:25699400-25702600 Weak transcription Brain Cingulate Gyrus brain
6 chr20:25699600-25701400 Enhancers Fetal Thymus thymus
7 chr20:25699800-25707400 Weak transcription Psoas Muscle Psoas
8 chr20:25700000-25701400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr20:25700000-25701400 Enhancers Primary T killer naive cells fromperipheralblood blood
10 chr20:25700000-25708000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr20:25700200-25701400 Enhancers Esophagus oesophagus
12 chr20:25700200-25701400 Enhancers Thymus Thymus
13 chr20:25700400-25701800 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr20:25700400-25725400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr20:25700600-25701400 Strong transcription Ovary ovary
16 chr20:25700600-25701600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr20:25700600-25705800 Weak transcription Dnd41 blood
18 chr20:25701000-25701400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr20:25701000-25701400 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
20 chr20:25701000-25701600 Weak transcription Primary T cells from cord blood blood
21 chr20:25701000-25701600 ZNF genes & repeats Aorta Aorta
22 chr20:25701000-25701600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
23 chr20:25701000-25702000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
24 chr20:25701200-25701400 Enhancers NHEK skin
25 chr20:25701200-25701600 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr20:25701200-25702400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr20:25701200-25706200 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr20:25701200-25706200 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr20:25701200-25706200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr20:25701200-25706600 Weak transcription Pancreas Pancrea
31 chr20:25701200-25720200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015