Variant report

Variant	rs6132819
Chromosome Location	chr20:25218618-25218619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:25217672..25220139-chr20:25231086..25234075,2	K562	blood:
2	chr20:24972383..24974540-chr20:25217618..25219983,2	MCF-7	breast:
3	chr20:25183250..25185573-chr20:25216058..25218999,2	K562	blood:
4	chr20:25202630..25205811-chr20:25216329..25219986,4	MCF-7	breast:
5	chr20:25218111..25220827-chr20:25369556..25371592,2	MCF-7	breast:
6	chr20:25206419..25208842-chr20:25217739..25219555,2	MCF-7	breast:
7	chr20:25200803..25202530-chr20:25217099..25219060,2	MCF-7	breast:
8	chr20:25182714..25185445-chr20:25216908..25218844,2	MCF-7	breast:
9	chr20:25212487..25223003-chr20:25225155..25231821,24	MCF-7	breast:
10	chr20:25210927..25216331-chr20:25216727..25222043,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100997	Chromatin interaction
ENSG00000268302	Chromatin interaction
ENSG00000101474	Chromatin interaction
ENSG00000197586	Chromatin interaction
ENSG00000100994	Chromatin interaction

Extended variants
information (count: 220 )
Associated
traits (count: 24 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs1007707	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs1007708	0.80[ASN][1000 genomes]
rs1044573	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1046073	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1077889	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10966	0.87[EUR][1000 genomes]
rs11087505	0.80[ASN][1000 genomes]
rs11100	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1118963	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1130694	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11698185	0.86[JPT][hapmap]
rs11699953	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13038092	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1473695	0.86[JPT][hapmap]
rs1555330	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888997	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1888998	0.90[EUR][1000 genomes]
rs1888999	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2145126	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2151144	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2227890	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2227892	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257233	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257420	0.89[EUR][1000 genomes]
rs2257432	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257461	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257464	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257496	0.89[EUR][1000 genomes]
rs2257705	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257712	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257808	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257809	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257982	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257985	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2257988	0.89[EUR][1000 genomes]
rs2257991	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2258066	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2258135	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2258201	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2258563	0.89[EUR][1000 genomes]
rs2258617	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2258719	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2258728	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs2258769	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2258879	0.89[EUR][1000 genomes]
rs2258884	0.89[EUR][1000 genomes]
rs2259837	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2259873	0.89[EUR][1000 genomes]
rs2259926	0.89[EUR][1000 genomes]
rs2259928	0.89[EUR][1000 genomes]
rs2259956	0.89[EUR][1000 genomes]
rs2260997	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2261109	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261115	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261698	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261720	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261747	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2261753	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261784	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261785	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261790	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261794	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2261796	0.90[EUR][1000 genomes]
rs2268879	1.00[JPT][hapmap]
rs2274890	0.81[LWK][hapmap]
rs2281558	0.88[LWK][hapmap]
rs2297496	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2297497	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs2387881	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs2424698	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424699	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2424700	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2424704	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2424708	0.90[EUR][1000 genomes]
rs2424710	0.90[EUR][1000 genomes]
rs2424711	0.90[EUR][1000 genomes]
rs2474766	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474769	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474777	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2482911	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap]
rs2482918	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap]
rs2482919	0.87[EUR][1000 genomes]
rs2482923	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs2482927	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2482928	0.81[EUR][1000 genomes]
rs2482930	0.81[EUR][1000 genomes]
rs2482931	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs2482937	0.80[EUR][1000 genomes]
rs2482943	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2482948	0.87[EUR][1000 genomes]
rs2500399	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2500405	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap]
rs2500406	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs2500424	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2500432	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2500433	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2500436	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2500443	0.81[EUR][1000 genomes]
rs2500446	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs3002698	0.87[EUR][1000 genomes]
rs3002702	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs33999482	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3746337	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761117	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs4355182	0.91[EUR][1000 genomes]
rs4619688	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813557	0.90[EUR][1000 genomes]
rs4813562	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs4815404	0.87[EUR][1000 genomes]
rs4815405	0.83[EUR][1000 genomes]
rs4815407	0.80[EUR][1000 genomes]
rs4815411	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs4815412	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs4815417	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6037062	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6037069	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6037083	0.90[EUR][1000 genomes]
rs6037085	0.86[EUR][1000 genomes]
rs6037086	0.86[EUR][1000 genomes]
rs6037095	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs6037097	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6037103	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6037105	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6050425	1.00[JPT][hapmap]
rs6050427	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs6050431	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs6050439	0.80[ASN][1000 genomes]
rs6050442	0.80[ASN][1000 genomes]
rs6050445	0.80[ASN][1000 genomes]
rs6050463	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050464	0.82[EUR][1000 genomes]
rs6050472	0.84[ASN][1000 genomes]
rs6050477	0.89[CEU][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6050481	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050482	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6050513	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6050515	0.85[JPT][hapmap]
rs6050532	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6050542	0.83[EUR][1000 genomes]
rs6050544	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs6050547	0.82[EUR][1000 genomes]
rs6050559	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs6050561	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6050562	0.81[EUR][1000 genomes]
rs6050565	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6050567	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6050573	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6050590	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050598	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6050599	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6050611	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs6076336	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs6083776	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs6083799	0.81[EUR][1000 genomes]
rs6083804	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6083805	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs6083809	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6083818	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6083828	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs6083853	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap]
rs6083862	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs6107015	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6107017	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6107019	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6107027	0.81[GIH][hapmap]
rs6107031	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6115093	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115094	0.82[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115099	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6115100	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115101	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115109	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115118	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6115140	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs6115146	0.86[EUR][1000 genomes]
rs6115159	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6132820	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132821	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132822	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6132824	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132826	0.88[EUR][1000 genomes]
rs6138537	0.86[JPT][hapmap]
rs6138545	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6138546	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138550	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138553	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138554	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6138555	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66999585	0.87[EUR][1000 genomes]
rs7019	0.90[EUR][1000 genomes]
rs7020	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs7267979	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs7343481	0.86[EUR][1000 genomes]
rs7453	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8115257	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8124539	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs8125868	0.82[EUR][1000 genomes]
rs8184820	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884613	0.90[EUR][1000 genomes]
rs910996	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs910997	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9927	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1063494	chr20:25067286-25468557	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv1065101	chr20:25068046-25466542	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv544220	chr20:25068046-25466542	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv531480	chr20:25070067-25472684	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv585746	chr20:25071454-25470056	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
11	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv531481	chr20:25080583-25448944	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv949479	chr20:25096494-25467359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
14	nsv1061109	chr20:25101715-25472685	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
15	nsv544221	chr20:25101715-25472685	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
16	nsv1066667	chr20:25133066-25238976	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
17	nsv544222	chr20:25133066-25238976	Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:24)

SNP	Gene	Cis/trans	Tissue	Source
rs6132819	NINL	cis	parietal	SCAN
rs6132819	ABHD12	cis	Nerve Tibial	GTEx
rs6132819	NINL	cis	brain	seeQTL
rs6132819	C20orf22	cis	multi-tissue	Pritchard
rs6132819	DCLRE1C	trans	multi-tissue	Pritchard
rs6132819	ABHD12	cis	lesional skin	skin_eQTL
rs6132819	ABHD12	cis	uninvolved skin	skin_eQTL
rs6132819	ABHD12	cis	multi-tissue	Pritchard
rs6132819	ABHD12	cis	Temporal Cortex	GTEx
rs6132819	ABHD12	cis	Frontal Cortex	GTEx
rs6132819	ABHD12	cis	brain	seeQTL
rs6132819	NINL	cis	cerebellum	SCAN
rs6132819	PYGB	cis	Lymphoblastoid	GTEx
rs6132819	HDHD4	cis	multi-tissue	Pritchard
rs6132819	ABHD12	cis	lymphoblastoid	seeQTL
rs6132819	ABHD12	trans	brain	seeQTL
rs6132819	PYGB	cis	Whole Blood	GTEx
rs6132819	ABHD12	cis	cerebellum	SCAN
rs6132819	ABHD12	cis	Brain Pons	GTEx
rs6132819	PYGB	cis	cerebellum	SCAN
rs6132819	PYGB	cis	lymphoblastoid	seeQTL
rs6132819	GINS1	cis	parietal	SCAN
rs6132819	ABHD12	cis	Cerebellum	GTEx
rs6132819	PYGB	cis	multi-tissue	Pritchard

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25204200-25222800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr20:25213200-25221800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:25213400-25222200	Enhancers	HMEC	breast
4	chr20:25213600-25222200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:25213800-25220200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:25214200-25218800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr20:25214200-25220800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr20:25214400-25219400	Enhancers	Stomach Mucosa	stomach
9	chr20:25214400-25223000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr20:25215200-25218800	Enhancers	Osteobl	bone
11	chr20:25215200-25221800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr20:25215400-25219600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr20:25215400-25223200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:25215600-25221600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr20:25215800-25219600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr20:25215800-25221600	Weak transcription	Fetal Kidney	kidney
17	chr20:25215800-25222800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr20:25216000-25220200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr20:25216000-25222800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr20:25216600-25219400	Enhancers	Gastric	stomach
21	chr20:25216600-25219800	Enhancers	NHLF	lung
22	chr20:25216600-25220400	Enhancers	Esophagus	oesophagus
23	chr20:25217000-25219800	Enhancers	HSMMtube	muscle
24	chr20:25217000-25220400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr20:25217000-25220600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr20:25217200-25219600	Enhancers	NHDF-Ad	bronchial
27	chr20:25217200-25220800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr20:25217200-25220800	Enhancers	NH-A	brain
29	chr20:25217200-25221000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr20:25217400-25218800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr20:25217400-25220800	Enhancers	K562	blood
32	chr20:25217600-25219400	Enhancers	Right Atrium	heart
33	chr20:25217600-25219600	Enhancers	Aorta	Aorta
34	chr20:25217600-25227600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr20:25217800-25219200	Enhancers	Placenta	Placenta
36	chr20:25218000-25218800	Enhancers	Stomach Smooth Muscle	stomach
37	chr20:25218000-25219000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr20:25218000-25219200	Flanking Active TSS	Hela-S3	cervix
39	chr20:25218000-25219400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr20:25218000-25219400	Enhancers	Psoas Muscle	Psoas
41	chr20:25218000-25219400	Enhancers	Right Ventricle	heart
42	chr20:25218000-25219400	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr20:25218200-25218800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr20:25218200-25219000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr20:25218200-25219000	Enhancers	Colonic Mucosa	Colon
46	chr20:25218200-25219200	Enhancers	Adipose Nuclei	Adipose
47	chr20:25218200-25219200	Enhancers	Left Ventricle	heart
48	chr20:25218200-25219200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
49	chr20:25218200-25219200	Enhancers	Spleen	Spleen
50	chr20:25218200-25219400	Enhancers	Cortex derived primary cultured neurospheres	brain

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