Variant report

Variant rs6115109
Chromosome Location chr20:25239667-25239668
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25229800-25250000 Weak transcription Placenta Amnion Placenta Amnion
2 chr20:25230200-25239800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr20:25230200-25240400 Weak transcription H9 Cell Line embryonic stem cell
4 chr20:25230200-25240400 Weak transcription Primary neutrophils fromperipheralblood blood
5 chr20:25230400-25239800 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr20:25230400-25239800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr20:25230400-25291600 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr20:25230600-25239800 Weak transcription Fetal Lung lung
9 chr20:25231000-25239800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr20:25231000-25240400 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr20:25231200-25251800 Weak transcription Hela-S3 cervix
12 chr20:25231200-25252200 Weak transcription HUVEC blood vessel
13 chr20:25231400-25240000 Weak transcription H1 Cell Line embryonic stem cell
14 chr20:25231400-25240800 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr20:25231400-25249800 Weak transcription Small Intestine intestine
16 chr20:25232600-25240000 Weak transcription Thymus Thymus
17 chr20:25233200-25252200 Weak transcription Fetal Brain Male brain
18 chr20:25234000-25240000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr20:25234000-25240200 Weak transcription HSMM muscle
20 chr20:25234600-25242400 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr20:25235000-25243000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr20:25235600-25239800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr20:25235600-25291200 Weak transcription Fetal Kidney kidney
24 chr20:25235800-25240000 Weak transcription Fetal Brain Female brain
25 chr20:25236000-25239800 Weak transcription NH-A brain
26 chr20:25236000-25242200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr20:25236200-25240600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr20:25236200-25241600 Genic enhancers Rectal Mucosa Donor 31 rectum
29 chr20:25236200-25243000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr20:25236200-25251600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr20:25236400-25240200 Weak transcription HSMMtube muscle
32 chr20:25236400-25241000 Strong transcription NHEK skin
33 chr20:25236600-25253800 Weak transcription Psoas Muscle Psoas
34 chr20:25236800-25242000 Strong transcription A549 lung
35 chr20:25237200-25241200 Enhancers Primary T helper cells PMA-I stimulated --
36 chr20:25237400-25241400 Enhancers Primary T helper naive cells fromperipheralblood blood
37 chr20:25237600-25240000 Weak transcription Ovary ovary
38 chr20:25237600-25242800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr20:25237600-25243000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr20:25237600-25243000 Strong transcription Muscle Satellite Cultured Cells --
41 chr20:25237600-25249800 Weak transcription NHDF-Ad bronchial
42 chr20:25237600-25262800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr20:25237800-25241600 Strong transcription HepG2 liver
44 chr20:25238000-25240000 Weak transcription GM12878-XiMat blood
45 chr20:25238000-25249800 Weak transcription Liver Liver
46 chr20:25238000-25250000 Weak transcription Placenta Placenta
47 chr20:25238200-25240000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr20:25238200-25241200 Strong transcription HMEC breast
49 chr20:25238200-25242000 Genic enhancers Fetal Intestine Small intestine
50 chr20:25238400-25239800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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