Variant report

Variant	rs12119039
Chromosome Location	chr1:214690828-214690829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11120345	1.00[EUR][1000 genomes]
rs11120346	1.00[EUR][1000 genomes]
rs11120347	1.00[EUR][1000 genomes]
rs11120348	1.00[EUR][1000 genomes]
rs11810525	1.00[EUR][1000 genomes]
rs12121515	1.00[EUR][1000 genomes]
rs12124603	1.00[EUR][1000 genomes]
rs12125611	1.00[EUR][1000 genomes]
rs12126820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127207	1.00[EUR][1000 genomes]
rs12127340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127827	1.00[EUR][1000 genomes]
rs12129205	1.00[AMR][1000 genomes]
rs12129528	0.90[EUR][1000 genomes]
rs12135749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12142620	1.00[EUR][1000 genomes]
rs17023126	1.00[EUR][1000 genomes]
rs56662203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57108161	1.00[EUR][1000 genomes]
rs59160493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60226530	1.00[EUR][1000 genomes]
rs60961360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690349	1.00[EUR][1000 genomes]
rs73077971	1.00[EUR][1000 genomes]
rs73077984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077995	1.00[EUR][1000 genomes]
rs73079704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079746	1.00[EUR][1000 genomes]
rs73079748	1.00[EUR][1000 genomes]
rs73079754	0.82[EUR][1000 genomes]
rs73079755	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73079759	0.82[EUR][1000 genomes]
rs73079763	0.82[EUR][1000 genomes]
rs73079764	0.82[EUR][1000 genomes]
rs73079768	0.82[EUR][1000 genomes]
rs7539678	1.00[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
2	chr1:214669800-214700400	Weak transcription	Aorta	Aorta
3	chr1:214686800-214693000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:214686800-214694400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:214687800-214698400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:214688200-214692000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:214688200-214693800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:214688400-214692000	Enhancers	NH-A	brain
9	chr1:214688400-214697800	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:214688400-214698400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:214688400-214706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:214688400-214710600	Weak transcription	Spleen	Spleen
13	chr1:214688600-214693200	Enhancers	Osteobl	bone
14	chr1:214689000-214691200	Enhancers	Fetal Intestine Small	intestine
15	chr1:214689000-214692000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr1:214689000-214693000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:214689200-214691000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:214689200-214691200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr1:214689200-214691200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr1:214689200-214692200	Enhancers	HSMMtube	muscle
21	chr1:214689400-214691000	Enhancers	Fetal Kidney	kidney
22	chr1:214689400-214691400	Enhancers	Placenta	Placenta
23	chr1:214689400-214694200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:214689400-214694400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:214689600-214692800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr1:214689800-214692600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:214689800-214693000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:214690000-214691400	Weak transcription	NHLF	lung
29	chr1:214690000-214693800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:214690000-214694000	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:214690200-214691200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:214690200-214691600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:214690200-214692800	Genic enhancers	HSMM	muscle
34	chr1:214690200-214694000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:214690200-214697600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:214690400-214691200	Enhancers	Gastric	stomach
37	chr1:214690400-214692200	Weak transcription	HUVEC	blood vessel
38	chr1:214690400-214692400	Weak transcription	Small Intestine	intestine
39	chr1:214690400-214695800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:214690600-214691400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:214690600-214691800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:214690600-214691800	Weak transcription	HMEC	breast
43	chr1:214690600-214692400	Enhancers	A549	lung
44	chr1:214690600-214692800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:214690600-214693200	Weak transcription	Fetal Heart	heart
46	chr1:214690600-214693800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:214690600-214694200	Weak transcription	Psoas Muscle	Psoas
48	chr1:214690600-214694600	Enhancers	NHDF-Ad	bronchial
49	chr1:214690600-214694800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:214690600-214696400	Weak transcription	Left Ventricle	heart

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