Variant report

Variant	rs56662203
Chromosome Location	chr1:214711899-214711900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11120345	1.00[EUR][1000 genomes]
rs11120346	1.00[EUR][1000 genomes]
rs11120347	1.00[EUR][1000 genomes]
rs11120348	1.00[EUR][1000 genomes]
rs11810525	1.00[EUR][1000 genomes]
rs12119039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121515	1.00[EUR][1000 genomes]
rs12124603	1.00[EUR][1000 genomes]
rs12125611	1.00[EUR][1000 genomes]
rs12126820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127207	1.00[EUR][1000 genomes]
rs12127340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127827	1.00[EUR][1000 genomes]
rs12129205	1.00[AMR][1000 genomes]
rs12129528	0.90[EUR][1000 genomes]
rs12135749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12142620	1.00[EUR][1000 genomes]
rs17023126	1.00[EUR][1000 genomes]
rs57108161	1.00[EUR][1000 genomes]
rs59160493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60226530	1.00[EUR][1000 genomes]
rs60961360	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690349	1.00[EUR][1000 genomes]
rs73077971	1.00[EUR][1000 genomes]
rs73077984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077995	1.00[EUR][1000 genomes]
rs73079704	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079746	1.00[EUR][1000 genomes]
rs73079748	1.00[EUR][1000 genomes]
rs73079754	0.82[EUR][1000 genomes]
rs73079755	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73079759	0.82[EUR][1000 genomes]
rs73079763	0.82[EUR][1000 genomes]
rs73079764	0.82[EUR][1000 genomes]
rs73079768	0.82[EUR][1000 genomes]
rs7539678	1.00[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214699800-214715200	Weak transcription	Stomach Mucosa	stomach
4	chr1:214701200-214719000	Weak transcription	Hela-S3	cervix
5	chr1:214702800-214718800	Weak transcription	Aorta	Aorta
6	chr1:214705600-214713000	Weak transcription	Fetal Kidney	kidney
7	chr1:214706600-214713600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:214706600-214713800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:214706600-214714600	Weak transcription	Lung	lung
10	chr1:214706600-214715600	Weak transcription	Esophagus	oesophagus
11	chr1:214706600-214715600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:214706600-214715600	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:214706600-214715600	Weak transcription	Left Ventricle	heart
14	chr1:214706600-214715600	Weak transcription	Ovary	ovary
15	chr1:214706600-214720000	Weak transcription	Fetal Intestine Small	intestine
16	chr1:214706600-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:214706800-214713200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:214706800-214713600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:214706800-214713600	Weak transcription	NHLF	lung
20	chr1:214706800-214713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:214706800-214714600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:214706800-214715600	Weak transcription	Gastric	stomach
23	chr1:214706800-214715600	Weak transcription	Pancreas	Pancrea
24	chr1:214707000-214718200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:214710400-214712200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:214710400-214712200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:214710400-214712200	Enhancers	Adipose Nuclei	Adipose
28	chr1:214710400-214712400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:214710400-214716800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr1:214710600-214712000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:214710600-214712200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:214710600-214712400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr1:214710600-214712400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:214710600-214712400	Enhancers	Rectal Smooth Muscle	rectum
35	chr1:214710600-214712400	Enhancers	HMEC	breast
36	chr1:214710600-214713400	Enhancers	Fetal Lung	lung
37	chr1:214710600-214713600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:214710600-214714000	Enhancers	Fetal Heart	heart
39	chr1:214710600-214714200	Enhancers	NHDF-Ad	bronchial
40	chr1:214710800-214712000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:214710800-214712000	Enhancers	Right Ventricle	heart
42	chr1:214710800-214712200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr1:214710800-214712200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr1:214710800-214712600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr1:214710800-214714200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:214710800-214714200	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr1:214710800-214718600	Weak transcription	Right Atrium	heart
48	chr1:214711000-214712200	Enhancers	Fetal Stomach	stomach
49	chr1:214711000-214713000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:214711000-214714000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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