Variant report

Variant	rs73079759
Chromosome Location	chr1:214715458-214715459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214715431..214717013-chr1:214723048..214725256,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152104	Chromatin interaction

rs_ID	r²[population]
rs11120345	0.82[EUR][1000 genomes]
rs11120346	0.82[EUR][1000 genomes]
rs11120347	0.82[EUR][1000 genomes]
rs11120348	0.82[EUR][1000 genomes]
rs11810525	0.82[EUR][1000 genomes]
rs12119039	0.82[EUR][1000 genomes]
rs12121515	0.82[EUR][1000 genomes]
rs12124603	0.82[EUR][1000 genomes]
rs12125611	0.82[EUR][1000 genomes]
rs12126820	0.82[EUR][1000 genomes]
rs12127207	0.82[EUR][1000 genomes]
rs12127340	0.82[EUR][1000 genomes]
rs12127827	0.82[EUR][1000 genomes]
rs12135749	0.82[EUR][1000 genomes]
rs12136877	0.82[EUR][1000 genomes]
rs12142620	0.82[EUR][1000 genomes]
rs17023126	0.82[EUR][1000 genomes]
rs56662203	0.82[EUR][1000 genomes]
rs57108161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59160493	0.82[EUR][1000 genomes]
rs60226530	0.82[EUR][1000 genomes]
rs60961360	0.82[EUR][1000 genomes]
rs6690349	0.82[EUR][1000 genomes]
rs73077971	0.82[EUR][1000 genomes]
rs73077984	0.82[EUR][1000 genomes]
rs73077989	0.82[EUR][1000 genomes]
rs73077995	0.82[EUR][1000 genomes]
rs73079704	0.82[EUR][1000 genomes]
rs73079729	0.82[EUR][1000 genomes]
rs73079746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73079748	0.82[EUR][1000 genomes]
rs73079754	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079755	1.00[EUR][1000 genomes]
rs73079763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079768	1.00[EUR][1000 genomes]
rs7539678	0.82[EUR][1000 genomes]

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214701200-214719000	Weak transcription	Hela-S3	cervix
4	chr1:214702800-214718800	Weak transcription	Aorta	Aorta
5	chr1:214706600-214715600	Weak transcription	Esophagus	oesophagus
6	chr1:214706600-214715600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:214706600-214715600	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:214706600-214715600	Weak transcription	Left Ventricle	heart
9	chr1:214706600-214715600	Weak transcription	Ovary	ovary
10	chr1:214706600-214720000	Weak transcription	Fetal Intestine Small	intestine
11	chr1:214706600-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:214706800-214715600	Weak transcription	Gastric	stomach
13	chr1:214706800-214715600	Weak transcription	Pancreas	Pancrea
14	chr1:214707000-214718200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:214710400-214716800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr1:214710800-214718600	Weak transcription	Right Atrium	heart
17	chr1:214711000-214715600	Weak transcription	Spleen	Spleen
18	chr1:214711600-214716000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:214711800-214716600	Enhancers	Colon Smooth Muscle	Colon
20	chr1:214711800-214719400	Weak transcription	A549	lung
21	chr1:214712000-214719800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:214712000-214721200	Weak transcription	HSMMtube	muscle
23	chr1:214712200-214715600	Weak transcription	Adipose Nuclei	Adipose
24	chr1:214712200-214719800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:214713000-214715600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:214713000-214716000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr1:214713000-214716200	Enhancers	HUVEC	blood vessel
28	chr1:214713600-214716400	Enhancers	Psoas Muscle	Psoas
29	chr1:214714000-214715600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:214714000-214715600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr1:214714000-214719200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:214714000-214720600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:214714000-214720800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:214714000-214722400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr1:214714000-214722400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:214714000-214722400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:214714000-214722400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:214714200-214716400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:214714200-214719400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:214714200-214720600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr1:214714400-214716200	Enhancers	Rectal Smooth Muscle	rectum
42	chr1:214714400-214718400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr1:214714400-214719400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr1:214714600-214715800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
45	chr1:214714600-214716000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:214714600-214716000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr1:214714800-214715600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr1:214714800-214715600	Weak transcription	Lung	lung
49	chr1:214714800-214715600	Weak transcription	Right Ventricle	heart
50	chr1:214714800-214715800	Weak transcription	Fetal Kidney	kidney

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