The 2.0 version of rSNPBase

Variant report

Variant rs12128892
Chromosome Location chr1:84624893-84624894
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84610400-84633400 Weak transcription Fetal Kidney kidney
2 chr1:84611600-84629800 Weak transcription Fetal Stomach stomach
3 chr1:84612800-84628800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:84614000-84633800 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:84614600-84625600 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:84614800-84629000 Weak transcription Brain Hippocampus Middle brain
7 chr1:84615800-84634800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
8 chr1:84616200-84635200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr1:84618800-84630400 Weak transcription Primary B cells from cord blood blood
10 chr1:84619000-84628800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:84619000-84628800 Weak transcription Gastric stomach
12 chr1:84619200-84630200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:84621800-84625400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:84622000-84628800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr1:84622200-84626000 Strong transcription Primary hematopoietic stem cells blood
16 chr1:84622200-84630000 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:84622400-84625400 Weak transcription Aorta Aorta
18 chr1:84622400-84635800 Weak transcription Small Intestine intestine
19 chr1:84622600-84628800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr1:84622800-84625600 Weak transcription Stomach Mucosa stomach
21 chr1:84622800-84628000 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:84623000-84625600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr1:84623000-84625600 Weak transcription Primary T killer naive cells fromperipheralblood blood
24 chr1:84623000-84626800 Weak transcription HUVEC blood vessel
25 chr1:84623000-84627600 Weak transcription NHEK skin
26 chr1:84623000-84629800 Weak transcription Primary B cells from peripheral blood blood
27 chr1:84623000-84639200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr1:84623200-84625200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr1:84623400-84626000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:84623600-84625200 Weak transcription Primary T killer memory cells from peripheral blood blood
31 chr1:84623800-84630000 Enhancers Primary T helper cells PMA-I stimulated --
32 chr1:84624000-84628800 Weak transcription Primary T cells fromperipheralblood blood
33 chr1:84624000-84629200 Weak transcription Fetal Thymus thymus
34 chr1:84624000-84651800 Weak transcription Thymus Thymus
35 chr1:84624200-84625200 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr1:84624200-84625200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:84624200-84626800 Enhancers Primary T helper cells fromperipheralblood blood
38 chr1:84624200-84630800 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr1:84624400-84626000 Enhancers Primary T cells from cord blood blood
40 chr1:84624600-84625000 Weak transcription Dnd41 blood
41 chr1:84624800-84633200 Enhancers Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015