The 2.0 version of rSNPBase

Variant report

Variant rs12562031
Chromosome Location chr1:84666326-84666327
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84652200-84675000 Weak transcription Pancreas Pancrea
2 chr1:84652400-84689800 Weak transcription Aorta Aorta
3 chr1:84653400-84674800 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:84657600-84708000 Weak transcription Left Ventricle heart
5 chr1:84658400-84667600 Weak transcription NHDF-Ad bronchial
6 chr1:84659000-84666600 Weak transcription H1 Cell Line embryonic stem cell
7 chr1:84659000-84672000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:84659000-84674600 Weak transcription Osteobl bone
9 chr1:84659000-84685000 Weak transcription Rectal Smooth Muscle rectum
10 chr1:84659000-84700600 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:84659000-84700800 Weak transcription Colon Smooth Muscle Colon
12 chr1:84659200-84677000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:84659200-84688400 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr1:84659400-84666400 Strong transcription Primary T cells fromperipheralblood blood
15 chr1:84659400-84666600 Strong transcription Primary B cells from peripheral blood blood
16 chr1:84659400-84668000 Strong transcription Fetal Thymus thymus
17 chr1:84659400-84670400 Strong transcription Primary T helper cells fromperipheralblood blood
18 chr1:84659400-84672000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:84659400-84675200 Strong transcription Dnd41 blood
20 chr1:84659400-84677200 Weak transcription Psoas Muscle Psoas
21 chr1:84659400-84685400 Weak transcription Stomach Smooth Muscle stomach
22 chr1:84659600-84672000 Weak transcription HMEC breast
23 chr1:84659600-84673600 Weak transcription Placenta Placenta
24 chr1:84659600-84675000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr1:84659800-84667400 Weak transcription Duodenum Mucosa Duodenum
26 chr1:84659800-84701400 Weak transcription NHLF lung
27 chr1:84660200-84666800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:84660200-84672400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:84660400-84674400 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr1:84660600-84683200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:84660600-84686200 Weak transcription Fetal Intestine Small intestine
32 chr1:84660800-84688400 Weak transcription Fetal Brain Male brain
33 chr1:84661400-84670200 Strong transcription Primary T helper cells PMA-I stimulated --
34 chr1:84661800-84666400 Strong transcription Primary T killer naive cells fromperipheralblood blood
35 chr1:84661800-84666600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr1:84661800-84671600 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr1:84662000-84667800 Strong transcription Rectal Mucosa Donor 31 rectum
38 chr1:84662400-84666400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:84662600-84673400 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr1:84662800-84666400 Strong transcription Brain Anterior Caudate brain
41 chr1:84663000-84670400 Weak transcription Fetal Heart heart
42 chr1:84663200-84671600 Weak transcription HSMM muscle
43 chr1:84663200-84684600 Weak transcription Hela-S3 cervix
44 chr1:84663600-84668200 Strong transcription Primary T helper naive cells from peripheral blood blood
45 chr1:84664200-84666400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr1:84665200-84666400 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr1:84665200-84666600 Strong transcription Primary T cells from cord blood blood
48 chr1:84665200-84666800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:84665200-84668400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:84665200-84669000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015