The 2.0 version of rSNPBase

Variant report

Variant rs955492
Chromosome Location chr1:84657539-84657540
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84640000-84658800 Weak transcription Fetal Brain Male brain
2 chr1:84640200-84658600 Weak transcription Osteobl bone
3 chr1:84640400-84658200 Weak transcription NHDF-Ad bronchial
4 chr1:84640400-84658400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:84640400-84665000 Weak transcription NH-A brain
6 chr1:84641200-84658600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr1:84644400-84658800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:84646400-84662600 Weak transcription Colonic Mucosa Colon
9 chr1:84647400-84658800 Strong transcription Fetal Thymus thymus
10 chr1:84649400-84659800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:84649600-84658200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:84650000-84658800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:84650600-84658600 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr1:84650600-84662400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:84650800-84658000 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:84650800-84658600 Weak transcription Stomach Smooth Muscle stomach
17 chr1:84652200-84658600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:84652200-84675000 Weak transcription Pancreas Pancrea
19 chr1:84652400-84689800 Weak transcription Aorta Aorta
20 chr1:84652600-84658400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr1:84652600-84658600 Weak transcription Fetal Stomach stomach
22 chr1:84653200-84658400 Weak transcription HUVEC blood vessel
23 chr1:84653400-84674800 Weak transcription Placenta Amnion Placenta Amnion
24 chr1:84654000-84659400 ZNF genes & repeats Dnd41 blood
25 chr1:84654400-84659400 ZNF genes & repeats Primary B cells from peripheral blood blood
26 chr1:84654800-84658600 Strong transcription Primary monocytes fromperipheralblood blood
27 chr1:84654800-84659400 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
28 chr1:84654800-84660200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
29 chr1:84654800-84661000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:84654800-84661200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:84655000-84657600 ZNF genes & repeats Fetal Intestine Large intestine
32 chr1:84655000-84657800 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
33 chr1:84655000-84659400 ZNF genes & repeats Primary T cells fromperipheralblood blood
34 chr1:84655000-84661200 ZNF genes & repeats Primary hematopoietic stem cells blood
35 chr1:84655200-84659600 ZNF genes & repeats Primary B cells from cord blood blood
36 chr1:84655200-84659600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
37 chr1:84655600-84657600 Strong transcription Brain Germinal Matrix brain
38 chr1:84655800-84658600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:84655800-84658600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr1:84655800-84660400 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
41 chr1:84656200-84657600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:84656200-84659600 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
43 chr1:84656400-84659000 ZNF genes & repeats Primary T helper memory cells from peripheral blood 2 blood
44 chr1:84656400-84659000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
45 chr1:84656400-84659200 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
46 chr1:84656400-84659400 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
47 chr1:84656400-84659400 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
48 chr1:84656400-84659600 ZNF genes & repeats Primary T helper memory cells from peripheral blood 1 blood
49 chr1:84656400-84660000 ZNF genes & repeats Primary T cells from cord blood blood
50 chr1:84656600-84657600 ZNF genes & repeats Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015